to take advantage of the flexibility of plot.phylo.
This might be your solution too.
Viren
-Original Message-
From: Gilles Benjamin Leduc [mailto:g...@hi.is]
Sent: Saturday, December 01, 2012 5:20 PM
To: Viky Koralkova
Cc: Amin, Viren; r-sig-phylo@r-project.org
Subject: Re: [R-sig-phylo
Mathias,
I am also currently trying on plotting au/bp values from pvclust to tree
plot from ape package.
Were you able to figure this out? If you did, I would really appreciate
if you can provide me tips.
Thanks
Viren
[[alternative HTML version deleted]]
Sender: r-sig-phylo-boun...@r-project.org
Date: Sat, 19 Nov 2011 10:26:02
To: r-sig-phylo@r-project.org
Subject: Re: [R-sig-phylo] ape and pvclust
Hi Mathias,
a fast way to see/check the order of nodes in the tree (before assigning
any values to the nodes) is:
plot(mytree)
nodelabels
Hi,
I wonder if it's possible to plot the au and bp values computed by
pvclust on the nodes of an pyhlo tree of the ape package.
It should look like here:
http://treethinkers.blogspot.com/2008/10/labeling-trees-posterior-probability.html
I tried to transfer the computed values put they are not
Hi Mathias,
a fast way to see/check the order of nodes in the tree (before assigning
any values to the nodes) is:
plot(mytree)
nodelabels()
The labels you need to show will then have to be a vector with its
elements in the order of the numbering of nodes you see in the tree.
Normally nodes
