Re: [R-sig-phylo] print circles in the tree nodes coloring by PP

2023-08-11 Thread Pedro Taucce
Dear Liam, Many thanks for your answer! Especially for making a blog post about it. Cheers! Pedro - Dr. Pedro P. G. Taucce Postdoctoral Researcher (CNPq - PDJ) National Institute of Amazonian Research (INPA) Av. André Araújo 2936, Petrópolis CEP 69.067-375 Manaus, AM www.pedrotaucce.org

Re: [R-sig-phylo] print circles in the tree nodes coloring by PP

2023-08-11 Thread Liam J. Revell
Dear Pedro. The common way to accomplish this is using /ape::nodelabels/; however, in Chapter 13 of my recent book with Luke Harmon we show how to code it yourself pretty easily. I also just posted a solution that you

[R-sig-phylo] print circles in the tree nodes coloring by PP

2023-08-10 Thread Pedro Taucce
Dear all, I want to plot an ultrametric BEAST2 tree with circles in the nodes colored by posterior probability: > 0.95 black, between 0.5 and 0.95 gray and 0.5 and below no circle (or white). Is that possible? I have tried several packages and solutions and the more close solution I figured out