Hi Liam and Nicholas.
write.nexus.data() accepts only lists as specified in the help page, but
it's a bit of an anomaly since the same help page says the sequences
must be aligned. I have modified this function so that it now accepts
both lists and matrices.
Best,
Emmanuel
Le 18/09/2014
This solved the problem exactly, thank you very much.
Nick
On Thu, Sep 18, 2014 at 12:22 AM, Liam J. Revell liam.rev...@umb.edu
wrote:
Hi Nicholas.
I think this is a bug. Try the following to circumvent:
write.nexus.data(as.list(data), file=test.nex, interleaved=TRUE,
Hi,
I am having a problem with write.nexus.data, such that the file generated
is nonsense.
I have a very, very large data set, but have been working with a subset
trying to solve this problem. My data is in .fasta format, and I am looking
to convert it into nexus format.
I load the data:
Hi Nicholas.
I think this is a bug. Try the following to circumvent:
write.nexus.data(as.list(data), file=test.nex, interleaved=TRUE,
charsperline=100)
Since I don't have your dataset, I can't check it; but it fixed the
problem in another dataset with which I was able to reproduce the
