Dear Brad,
here are some solutions for your problems. I assume unrooted trees
here and ignore the position of the root, so you may additionaly check
for the position of the root.
On 3/24/11, Ruhfel Brad ruh...@gmail.com wrote:
Dear all,
I am wondering if there is some way using R to sort a
Hi,
Klaus beat me to it, but since there are more ways to do it ;-)
Two functions in the APE package are handy: is.monophyletic(), and
all.equal.phylo(). See the help for options.
They could be used in wrapper functions, like this
filter.mono - function (x, grp) {
fun - function (x)
Dear all,
I am wondering if there is some way using R to sort a file of multiple trees
(i.e., BEAST output) to either
1) return all trees that match a constraint topology (backbone or full
topology) or
2) return all trees that have a monophyletic clade of a list of taxa.
Any help much
