[R-sig-phylo] a parameter EB, geiger

2011-07-28 Thread Roland Sookias
Hi Can anyone tell me what the a parameter in the EB model in geiger is? Thanks Roland ___ R-sig-phylo mailing list R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo

Re: [R-sig-phylo] Auteur (Roland Sookias)

2011-07-28 Thread Roland Sookias
Cheers, yes I retrieved it and it worked! On Thu, Jul 28, 2011 at 1:16 AM, Jonathan Eastman jonathan.east...@gmail.com wrote: Hi Roland, You might have better luck installing the precompiled version for Windows (auteur_0.11.0612.zip), which can be retrieved from

Re: [R-sig-phylo] pegas package: Problem using nuc.div and tajima d - error with dist.dna() - character variables must be duplicated in .C/.Fortran

2011-07-28 Thread Emmanuel Paradis
Hi, Victor Garcia wrote on 26/07/2011 14:58: Hi, For the last few days I have tried utilise your package pegas in order to obtain some values for indices like the nuclear diversity and tajimas d value. I have modified my dataset (a text file containing dna sequences) in order to be able

[R-sig-phylo] phylogenetic tree diameter

2011-07-28 Thread John Denton
Hi all, I'm using the ape package, and was wondering if there was a method in the package or code for calculating the diameter (http://mathworld.wolfram.com/GraphDiameter.html) of phylogenetic tree objects. I had been looking in to exporting trees from ape into a graph theory package (igraph),

Re: [R-sig-phylo] phylogenetic tree diameter

2011-07-28 Thread Klaus Schliep
Hi John, On 7/28/11, John Denton jden...@amnh.org wrote: Hi all, I'm using the ape package, and was wondering if there was a method in the package or code for calculating the diameter (http://mathworld.wolfram.com/GraphDiameter.html) of phylogenetic tree objects. I had been looking in to