Luke Harmon said --
Yes Emmanuel is correct, fitDiscrete does not deal with polymorphic data. I
have a fix that I made for a specific project that I'm sending to Charles,
if anyone else is interested email me off-list. It's very clunky.
I suspect this is not just a technical programming
Dear Listserve,
I have a seemingly simple problem that I cannot figure out. I would like to
convert an element of class DNAbin to a matrix.
Consider the example from the read.dna help file:
cat(3 40,
No305 NTTCGACACACCCACTACTNTTATCAGTCACT,
No304
Hi Josh,
Try doing this when you read in the data:
ex.dna-read.dna(exdna.txt,format=sequential,as.character=T)
This will return an object of class matrix instead of a DNAbin object.
The elements in the matrix should just be the letters from your input file.
There may be a better way to do
Hello everyone,
By any chance, has anybody tried putting together an R code to perform
the analyses of range overlap in a phylogenetic context proposed by
Fitzpatrick and Turelli 2006? It is a nice way to incorporate
measurements of pair-wise similarity into a phylogenetic context. Warren
et
Rob,
Excellent! Thank you so much for the hint.
Cheers,
Gustavo
On 4/7/11 8:15 PM, Rob Lanfear wrote:
Hi Gustavo,
This is implemented in the package phyloclim, and the function is
age.range.correlation(). Here's the description from the help file:
This function can be used to test for
