Re: [R-sig-phylo] variation in rates over time, unexpected message when using Brownie.lite

People, many thanks for keeping this list so functional. Sorry for the slow reply, had a small accident, but is ok now. I'll answer Liam first and Ted and Brian in sequence. Liam, yes, the error is fatal, and the BrownieREML worked. But seems it did not converged: These are the results:

[R-sig-phylo] phy.manova from Geiger package gives an error of different variable length with variables of equal length

Hope not being abusing of this list. Possibly, I missed something. I tried both with matrix and dataframe and reached to the same problem: phy.manova(tree, c(table$option,table$difoption), table$morph, data.names=NULL, nsim=1000, test=Wilks)Warning: no tip labels, order assumed to be the

Re: [R-sig-phylo] phy.manova from Geiger package gives an error of different variable length with variables of equal length

Hi Agus. I think the problem is that c() concatenates your data for the continuous dependent variables in your model into one long vector. Try instead: table-as.matrix(table) Y-cbind(table[,2],table[,3]) x-as.factor(table[,1]) phy.manova(tree,Y,x) Good luck. - Liam Liam J. Revell,