Dear Forum,
I have a list containing sampled trees for the same taxa and would
like to plot their consensus tree
with the support values (absolute numbers or frequencies) for the
various branches.
(as done by the Consense program of the Phylip suite)
I understand that boot.phylo() returns an
Hi Thomas,
Have you tried prop.clades?
Best,
Emmanuel
-Original Message-
From: Thomas Manke ma...@ie-freiburg.mpg.de
Sender: r-sig-phylo-boun...@r-project.org
Date: Mon, 16 Dec 2013 11:52:33
To: r-sig-phylo@r-project.org
Subject: [R-sig-phylo] plotting support value
Dear Forum,
I have
Dear Klaus Emmanuel,
Thank you for your fast answers. Both work!
There still is a deviation at the level of the consensus tree from
Phylip, but my technical problem has been solved.
Best wishes,
Thomas
==
# the script below uses the list of trees (example_trees.tre) from
#
Hi Thomas.
I also have a new R package, Rphylip, which calls PHYLIP programs
(including consense) from within R. This package presently covers about
40% or so of PHYLIP programs. It is not yet on CRAN, and should be
considered alpha (i.e., it is incomplete likely has bugs). Here is a
demo
