[R-sig-phylo] help with dist.multiPhylo needed

2014-01-23 Thread Juan Antonio Balbuena
Hello I would like to compute geodesic distances from random trees for comparison and hypothesis testing with those produced from a given set of trees. I am using dist.multiPhylo() in the 'distory' package, but it seems to be too compute-intensive. To illustrate my

Re: [R-sig-phylo] help with dist.multiPhylo needed

2014-01-23 Thread Juan Antonio Balbuena
Hi Klaus You are right. The problem was that my lin4 object was a list. I have saved the same trees in a text file as "(S8: 1.0, (((S4: 0.28596, S5: 0.28596): 0.63211, (S10: 0.88214, ((S6: 0.49245, S7: 0.49245): 0.24813, S9: 0.74058): 0.14156): 0.03592):

[R-sig-phylo] OUwie $solution.se

2014-01-23 Thread Maria Ghazali
Hi, How is it possible to get approximate standard errors of alpha and sigma^2 ($solution.se) in OUwie? Maybe, diagn=T should show me this element, but it does not work:  Error in dim(edges) : 'edges' is missing Thank you! [[alternative HTML version