Re: [R-sig-phylo] assign multiple discrete states to single tip

2015-03-25 Thread Liam J. Revell
Hi Matt. What is the purpose of this? To visualize the states on the tree? Or to conduct some kind of analysis (modeling evolution, reconstructing ancestral states, etc.) on the tree? If the former, then you can use tiplabels in the ape package, and supply a matrix to the argument pie in

[R-sig-phylo] assign multiple discrete states to single tip

2015-03-25 Thread Koski, Matthew H
Hi, I'd like to assign multiple discrete character states to tips that are polymorphic. E.g., color in a given species is polymorphic (pink or white) so it is assigned two states for color. Is there a way to do this without creating an extra 'polymorphic' category? There is a similar