Hi Jacob.
There is a function in phytools that does something like this. It is
called minRotate and it was designed to be used internally by
phylo.to.map but can also be used on its own. I have blogged about your
question and the function here:
Dear list subscribers.
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Hi Jacob,
Can you send an example of your output with rotateConstr()? Thanks.
Best,
Emmanuel
Le 08/04/2015 06:41, Jacob Berv a écrit :
Hi all,
Is there an easy way to get R to automatically rotate the nodes of a phylogeny
to match an arbitrary ordering of the tips?
Consider the following
The rotateConstr() function does not give me any errors -
Here is how I was trying to use it:
With a 200 taxon tree (tree A), I rotated ~50 nodes using rotate() to get it
how I wanted.
With a mostly similar (topologically identical, but different branch lengths,
so node numbers are not
