Emmanuel wrote:
>
> There is no distance formula for HKY or GTR model. For GTR, Rodrı́guez et
> al. developed a procedure to calculate a distance (also in Yang's 2006
> book). An example is given below with the woodmouse:
>
> matlog <- function(x) {
> tmp <- eigen(X)
> V <- tmp$vectors
>
Dear Andreas,
There is no distance formula for HKY or GTR model. For GTR, Rodrı́guez
et al. developed a procedure to calculate a distance (also in Yang's
2006 book). An example is given below with the woodmouse:
matlog <- function(x) {
tmp <- eigen(X)
V <- tmp$vectors
U <-
