Hi Martin.
The solution of Gopal will work to change the color scheme of the
'densityMap' object, but this is also automated in the function setMap.
For example (in which trees is our 'multiSimmap' object):
obj<-densityMap(trees,res=200,plot=FALSE)
plot(obj) ## original color gradient
Hi Martin,
The below code might help you.
require(phytools)
tree<-pbtree(n=100) # simulate tree
s<-sample(c(0,1),100,replace = T) # create character state
names(s)<-tree$tip.label # assign tip labels to character state
mtreel<-make.simmap(tree,s,nsim=10)
XX <- densityMap(mtreel, lwd =
Hello,
I want to change the colors of a Bayesian stochastic mapping, using
make.simmap (e.g., switching blue and red). Is it possible?
(I tried switching the order of the columns of the states -- no effect.)
Thanks for any help!
Martin Ramirez
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