[R-sig-phylo] abundance-weighted Faith phylogenetic diversity index

[Saleh Rahimlouye Barabi]

Dear list members,

In order to calculate the abundance-weighted Faith phylogenetic diversity 
index, I ran the function "weighted.faith()" from the lefse package (link 
below) using a community data matrix and a phylogeny. But I got the following 
error. I would be appreciated if you could help me to solve it.

AED <- weighted.faith(phy, comm)
Error in integer(max(oldnodes)) : vector size cannot be infinite
In addition: Warning message:
In max(oldnodes) : no non-missing arguments to max; returning -Inf

https://rdrr.io/github/NGSwenson/lefse_0.5/man/weighted.faith.html

Saleh Rahimlou
Ph.D. Candidate
Department of Botany and Ecology
University of Tartu
14A Ravila, 50411 Tartu
Estonia
Email: saleh.rahim...@ut.ee


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[R-sig-phylo] Postdoc in computational phylogenetics

[Liam Revell]

Dear list members.

I'm currently advertising a postdoctoral position in my lab at the 
University of Massachusetts Boston. The postdoc has a maximum duration 
of 2 years & is to work on the NSF project entitled 'ABI Development: 
Computational infrastructure for phylogenetic analysis in the R 
environment.' I will consider proposals for a remote postdoc, although 
postdocs working remotely should plan to spend at least 1-2 months/year 
in Boston (specifics to be negotiated).

More details about the position as well as a link to apply can be seen 
on the UMass-Boston HR site here: 
http://employmentopportunities.umb.edu/boston/en-us/job/503625/post-doctoral-research-fellow.

Please don't hesitate to contact me with any questions or concerns about 
the position.

Very sincerely, Liam

-- 
Liam J. Revell
Associate Professor, University of Massachusetts Boston
Profesor Asistente, Universidad Católica de la Ssma Concepción
web: http://faculty.umb.edu/liam.revell/, http://www.phytools.org

Academic Director UMass Boston Chile Abroad (starting 2019):
https://www.umb.edu/academics/caps/international/biology_chile
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