Re: [R-sig-phylo] How to sort trait data according to tree

2021-05-16 Thread Emmanuel Paradis
Hi Marguerite, The issue is about nlme::gls. The help page ?gls says: data: an optional data frame containing the variables named in ‘model’, ‘correlation’, ‘weights’, and ‘subset’. By default the variables are taken from the environment from which ‘gls’ is

[R-sig-phylo] Fitting models with continous characteres

2021-05-16 Thread Simon Lobos
Dear all, I am writing to seek for any advice with my phylogenetic comparative analysis in behavioural traits. I am trying to run an evolutionary model that contains other information rather than BW, OU or EB. The variables I am using are continuous (time proportion) and I want to fit them in

Re: [R-sig-phylo] How to sort trait data according to tree

2021-05-16 Thread Marguerite Butler
Aloha all, Does anyone know the answer to this question - how does ape pass the species name information into gls? Seems to be a global environment issue when using apeʻs corBrownian and nlmeʻs gls? and a very specific form is required, but why? Modified from ape help page for CorClasses: ---