Re: [R-sig-phylo] ancestral state reconstruction with a complex discrete trait

2022-11-08 Thread Liam J. Revell
Dear Chris. Does it make sense to treat {02} as an intermediate condition between {0} and {2}? If so, perhaps you'd like to try fitpolyMk in phytools, which can also easily combine with ancestral state estimation (e.g., with phytools::make.simmap). Here is an example:

[R-sig-phylo] ancestral state reconstruction with a complex discrete trait

2022-11-08 Thread Krzysztof Kozak
Hello, Is there a method for ancestral state reconstruction when the character can take on multiple values, and those values vary in complexity? For example, some species are white (0), some gray (1), some black (2), but then some are black and white (02). Two solutions I can think of are (1)