Re: [R-sig-phylo] AGY coding

Hi Joseph, The object is stored as DNAbin. Thanks for the paper. Some of the tips on my phylogeny have very biased GC content and I was planning on using some sort of recoding (RY or AGY), but the paper you mentioned makes some important points. Karla On Fri, Aug 24, 2018 at 4:52 PM Joseph

Re: [R-sig-phylo] AGY coding

Hi Karla. Not sure how you have your sequences stored, but if as a string you can do it yourself: str <- gsub("C|T", "Y", str); As for RY vs. AGY, this paper is very nice. Basically, if you are using them for

[R-sig-phylo] AGY coding

Dear all, Does anyone have a function for AGY coding of nucleotides? By the way, any thoughts on using RY- vs AGY-coding? Thanks! Karla [[alternative HTML version deleted]] ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org