Re: [R-sig-phylo] Collapsing branches with low bootstrap values

2013-08-22 Thread Klaus Schliep
On Thu, Aug 22, 2013 at 5:09 PM, Naxerova, Kamila naxer...@fas.harvard.eduwrote: Dear list, is there a function that will take a tree and the output of boot.phylo() and collapse branches below a chosen bootstrap value cutoff? Many thanks. Kamila

Re: [R-sig-phylo] Collapsing branches with low bootstrap values

2013-08-22 Thread Naxerova, Kamila
Thank you Klaus, this works like a charm. One more if I may: If I still want to have bootstrap values in my plot, how do I go about plotting those for my new tree? Kamila On Aug 22, 2013, at 12:12 PM, Klaus Schliep klaus.schl...@gmail.commailto:klaus.schl...@gmail.com wrote: Hi Kamila, try

Re: [R-sig-phylo] Collapsing branches with low bootstrap values

2013-08-22 Thread Naxerova, Kamila
So sorry for the silly question, I overlooked your show.node=T. Many thanks. Kamila On Aug 22, 2013, at 12:29 PM, Naxerova, Kamila naxer...@fas.harvard.edu wrote: Thank you Klaus, this works like a charm. One more if I may: If I still want to have bootstrap values in my plot, how do I go