Hi Joe,
Yes, I meant forward and backward rates are different at a single site. I
mistakenly thought that different forward and backward rates make the model
nonreversible. Thanks for the correction.
-Jordan
> On Sep 19, 2018, at 12:21 AM, Joe Felsenstein wrote:
>
> Jordan Gault asked:
>
Jordan Gault asked:
> I would like to do a worked example for an unequal-rates model as well but my
> understanding is that the re-rooting method is inappropriate for
> non-reversible models of trait evolution. How are marginal ancestral states
> estimated for non-reversible models of trait
Hello all,
I’m putting together a short lecture on ancestral state reconstruction and
would like to include some worked examples of marginal ancestral state
reconstruction on a small phylogeny. I’ve managed to do the calculations by
hand for a binary, discrete character under an equal-rate
