Dear forum,
I am trying to conduct an ouch analysis and for it I must determine the
ancestral selective regime at each node in my tree. To do so I need to conduct
ancestral reconstruction on discrete unordered data. To my knowledge no package
can do this in R (I hope I am wrong) and
Hi Martin.
Without more information or your input file, it's hard for me to
evaluate why read.simmap is hanging. Did you run:
tree-read.simmap(filename,format=nexus,version=1.5)
If you have your discrete character data in R, you can also use the
phytools function make.simmap to generate
