Re: [R-sig-phylo] Frequency histograms in APE

2017-08-03 Thread Emmanuel Paradis

Hi,

This was asked some time ago:

http://www.mail-archive.com/r-sig-phylo@r-project.org/msg04388.html

HTH

Best,

Emmanuel

Le 30/07/2017 à 10:58, LUCAS A. (599841) a écrit :

Hi

(This is my first query to a group like this, so my apologies if the subject is 
a little basic)

I have a data set of insect COI barcodes, that i've aligned and edited in MEGA. 
 I've also generated the K2P distances in MEGA, producing a very large 
spreadsheet of intra and inter specific distances.

I'd like to generate a frequency distribution histogram of conspecific and 
heterospecific distances for selected sub groups of my data.  I understand this 
can be done in the APE package, but am struggling to understand the method from 
the documentation.  Can anyone advise?

Andrew Lucas


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[R-sig-phylo] Frequency histograms in APE

2017-08-02 Thread LUCAS A. (599841)
Hi

(This is my first query to a group like this, so my apologies if the subject is 
a little basic)

I have a data set of insect COI barcodes, that i've aligned and edited in MEGA. 
 I've also generated the K2P distances in MEGA, producing a very large 
spreadsheet of intra and inter specific distances.

I'd like to generate a frequency distribution histogram of conspecific and 
heterospecific distances for selected sub groups of my data.  I understand this 
can be done in the APE package, but am struggling to understand the method from 
the documentation.  Can anyone advise?

Andrew Lucas


[[alternative HTML version deleted]]

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