Hi Augusto,
I was able to reproduce some of the errors you encountered. I suggest,
if you haven't done yet, to contact directly the authors of seqinr. They
have their own mailinglist and their web site is:
http://pbil.univ-lyon1.fr/software/seqinr/
Best,
Emmanuel
Augusto Ribas wrote on
Hello, i'm new in this list, and new in genetics field too.
I'm reading a book Analysis of Phylogenetics and Evolution with R and in
the book i saw about the function query() of the package seqinr to search
databases about specific sequences of our interest.
#A got a list of some frog species:
If it helps
library(seqinr)
s - choosebank(genbank)
query(bb,SP=Rhinella rubescens AND K=16S RIBOSOMAL
RNA,s$socket,verbose=T)
I'm checking the arguments...
... and everything is OK up to now.
I'm checking the status of the socket connection...
... and everything is OK up to now.
I'm sending
