Re: [R-sig-phylo] importing trees from birdtree.org into R

Thanks Nathan, I was right now able to figure out the problem. I noticed that the species list I was using had one blank space after each species' epithet. It was invisible at the original csv file, but after Klaus identified the trees were not in the downloaded file, it made me think there was

Re: [R-sig-phylo] importing trees from birdtree.org into R

Hi Agus I work next to the main developer for the birdtree.org site— glad to help figure the error if its on our end. I just downloaded a test file (Ericson sequenced, 100 trees) and it worked as intended including full trees. What species and settings did you choose for

Re: [R-sig-phylo] importing trees from birdtree.org into R

Thanks for that, Klaus! Regards Agus 2018-02-13 22:51 GMT-02:00 Klaus Schliep : > Dear Agustín, > > the nexus file on dropbox does not contain any trees. > If you open it in an editor you see this: > > > #NEXUS > > [Tree distribution from: The global diversity of birds

Re: [R-sig-phylo] importing trees from birdtree.org into R

Dear Agustín, the nexus file on dropbox does not contain any trees. If you open it in an editor you see this: #NEXUS [Tree distribution from: The global diversity of birds in space and time; W. Jetz, G. H. Thomas, J. B. Joy, K. Hartmann, A. O. Mooers doi:10.1038/nature11631] [Subsampled and

[R-sig-phylo] importing trees from birdtree.org into R

Dear list, I am puzzled with this error when importing a bird tree subset from https://birdtree.org/subsets/ . The subset is supposed to be in nexus format. However, trees<-read.nexus("output.nex") Error in if (tp[3] != "") obj$node.label <- tp[3] : missing value where TRUE/FALSE needed