Hi Laura.
There was a bug in make.simmap for the ARD model in earlier versions.
Can you check to make sure that you have the most recent version of
phytools? If you do, please let me know send the tree data that
result in this error.
The latest CRAN version of phytools is 0.4-45. You can
Hi,
I’m using the function “make.simmap” from Phytools to reconstruct ancestral
states in 10 trees with 248 tips obtained from a BEAST analysis. I believe
rates might be different between states (four states) and I think this
would probably be the best way to run it:
simmap.trees.bs -
