It seems the function was masked from some other package:
This works:
require(geiger)
geo - get(data(geospiza))
lphy - geiger::rescale(geo$phy, lambda, 0.9) # transform tree in one
fell swoop
Thanks again,
2014-05-16 15:49 GMT-03:00 Agus Camacho agus.cama...@gmail.com:
Thank you both,
It looks like transform.phylo has been deprecated. Use rescale.phylo.
All the best, Liam
Liam J. Revell, Assistant Professor of Biology
University of Massachusetts Boston
web: http://faculty.umb.edu/liam.revell/
email: liam.rev...@umb.edu
blog: http://blog.phytools.org
On 5/16/2014 2:20 PM,
Hi Agus -
Geiger has changed - now you should use rescale. E.g.
library(geiger)
geo - get(data(geospiza))
lphy - rescale(geo$phy, lambda, 0.5) # transform tree in one fell swoop
plot(lphy)
On May 16, 2014, at 11:20 AM, Agus Camacho agus.cama...@gmail.com wrote:
Dear list users,
Im
Thank you both,
However,
geo - get(data(geospiza))
lphy - rescale(geo$phy, lambda, 0.5) # transform tree in one fell swoop
Error in colMeans(x, na.rm = TRUE) : 'x' must be numeric
I got this error also for simulated and other real trees.
2014-05-16 15:24 GMT-03:00 Liam J. Revell
