Re: [R-sig-phylo] error when using function read.GenBank in ape

2016-11-12 Thread Eduardo Ascarrunz
Hi Emmanuel, Right! Sorry I misspoke. Best, Eduardo 2016-11-11 23:32 GMT+01:00 Emmanuel Paradis : > Hi Eduardo & Ting-Wen, > > ape 4.0 is not yet released. The available version is 3.5-0.10 and, you > are right Eduardo, it fixes this issue. The instructions to install this > new version of ape

[R-sig-phylo] Bug in bitsplits?

2016-11-12 Thread Leonid Chindelevitch
It looks like sometimes, the splits produced are not all distinct, namely: > Tr=rtree(10,rooted=TRUE) > Br=bitsplits(Tr)[[1]] > Br [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [1,] f3 fc f0 f0 c0 e0 f0 f0 [2,] c0 c0 c0 40 00 00 00 00 As you can see, the last two co

Re: [R-sig-phylo] Bug in bitsplits?

2016-11-12 Thread Leonid Chindelevitch
Oops, sorry, my bad, just realized that the function assumes the tree is unrooted, so this is not a bug! Leonid Leonid Chindelevitch, Assistant Professor, School of Computing Science, Simon Fraser University. Office: TASC 1 9425, University Avenue, Burnaby, BC V5A 1S6. Phone: 778-782-4973.