Re: [R-sig-phylo] Link between Mahalanobis distance and PGLS

2019-01-04 Thread Joe Felsenstein
Guillaume Louvel asked: > > So my first question is: can we directly apply the Mahalanobis distance > to measure a kind of "phylogeny-corrected" distance between 2 vectors of > trait values for a list of species? Since we assume a brownian motion, > we know these vectors should be drawn from a

[R-sig-phylo] Link between Mahalanobis distance and PGLS

2019-01-04 Thread Guillaume LOUVEL
Dear all, I read somewhere (but can't find the source again) that finding the least squares of a response variable Y against a linear combination of explanatory variables X given a covariance matrix V (that is, doing a Phylogenetic Generalized Least Squares) is equivalent to minimizing the