[R-sig-phylo] Help - phangorn ancestral.pars question and plotAnc problem

2015-06-16 Thread Martin Hughes
Hi Everyone I have a question and about ancestral.pars in the Phangorn package, and a problem in the plotAnc of the same package. The latter may be due to my lack of understanding of the former.sorry if something similar has already been answered, I did look in the archives but could not fi

[R-sig-phylo] Deltran parsimony in R

2016-11-07 Thread Martin Hughes
Dear everyone, Is there any straight forward way to do deltran specific parsimony ancestral character state reconstruction in R? I already know about using Phangorn for MPR and acctran. The function fitch.mvsl in the package mvSLOUCH may be useable but the documentation for the output of that