John,
I had to double-check this with someone who knew better first, but
they confirmed for me that the answer is that MrBayes doesn't infer a
Q matrix. By default, the Q matrix for Mk in MrBayes is always held
fixed so the rates of transition are always equal and fully
reversible, i.e. a simple
Hi folks,
I need to do some simulation using the Mkv model, and am wondering if there is
a way to extract Mk Q-matrix values from mrbayes. A look at report lists revmat
as an output, but I do not see any parameters in the .p files when I finish the
run.
Thanks,
~John
John S. S. Denton,
