Re: [Rdkit-discuss] Optimizing SSS in the RDKit

2009-02-12 Thread Andrew Dalke
On Feb 10, 2009, at 3:11 PM, Greg Landrum wrote: It would be quite interesting to use the new Ullmann code as a framework and do an implementation of the VF or VF2 algorithms used in vflib. I was surprised to see that there's a public BGL implementation of Ullman. I've seen mentions that

[Rdkit-discuss] Upcoming changes in the C++ API

2009-02-12 Thread Greg Landrum
Dear all, If you are using the RDKit from C++, please take a look at this wiki page, which describes an upcoming change to the API of ROMols: http://code.google.com/p/rdkit/wiki/ChangingGraphProperties If you use the code from Python, this does not affect you. Best Regards, -greg

Re: [Rdkit-discuss] Compiling for VS 2008

2009-02-12 Thread Evgueni Kolossov
Hi Greg, Thank you very much - it all works now. Another question - I still have boost 1.35 and I have noticed you are using 1.36. I want to pick up the latest dev. from svn and according to your message about C++ API changes do the fixes I need to implement in my code. The problem is - from

Re: [Rdkit-discuss] Compiling for VS 2008

2009-02-12 Thread Greg Landrum
Dear Evgueni, On Thu, Feb 12, 2009 at 10:22 AM, Evgueni Kolossov ekolos...@gmail.com wrote: Thank you very much - it all works now. Glad to hear it. Another question - I still have boost 1.35 and I have noticed you are using 1.36. I want to pick up the latest dev. from svn and according to

Re: [Rdkit-discuss] Compiling for VS 2008

2009-02-12 Thread Evgueni Kolossov
Thank you very much 2009/2/12 Greg Landrum greg.land...@gmail.com Dear Evgueni, On Thu, Feb 12, 2009 at 10:22 AM, Evgueni Kolossov ekolos...@gmail.com wrote: Thank you very much - it all works now. Glad to hear it. Another question - I still have boost 1.35 and I have noticed you

Re: [Rdkit-discuss] Compiling for VS 2008

2009-02-12 Thread Greg Landrum
On Thu, Feb 12, 2009 at 11:53 AM, Evgueni Kolossov ekolos...@gmail.com wrote: I have noticed a new version of bjam as well (3.1.17). have you tryed it? Yes, that's what I've been using: it works without problems. I should do a table/matrix of the versions of compilers, OSs, boost versions,

Re: [Rdkit-discuss] Optimizing SSS in the RDKit

2009-02-12 Thread nikolaus . stiefl
Would be interesting to take a set of compounds and look at a correlation matrix - maybe one can identify a set of generally discriminating bits that can be used for screening ? Probably not but it could be worth a try ... then memory would go down as well as discriminating power up? Nik

Re: [Rdkit-discuss] Optimizing SSS in the RDKit

2009-02-12 Thread Greg Landrum
On Thu, Feb 12, 2009 at 2:55 PM, Andrew Dalke da...@dalkescientific.com wrote: On Feb 12, 2009, at 8:46 AM, Greg Landrum wrote: I'm either not understanding completely or I disagree. The queries were constructed by fragmenting the molecules I searched through, so I'd expect lots of