[Rdkit-discuss] kekulize AllChem.CanonSmiles error and workaround

2017-07-31 Thread Konrad Koehler
Hi, I am having trouble canonicalizing smiles with ambiguous heteroaromatic tautomers such as imidazole. For example: >>> from rdkit import Chem >>> from rdkit.Chem import AllChem >>> smiles = ‘n1cncc1' >>> AllChem.CanonSmiles(smiles) [21:42:52] Can't kekulize mol. Unkekulized atoms: 0 1 2 3 4

[Rdkit-discuss] requested documentation update: conda rdkit installation

2017-07-31 Thread Konrad Koehler
Just a suggestion, I believe the following page: http://www.rdkit.org/docs/Install.html#how-to-install-rdkit-with-conda should include a link to https://anaconda.org/rdkit/rdkit and

[Rdkit-discuss] Nuget C# Prerelease

2017-07-31 Thread Brian Kelley
For the small percentage of you who use C# we finally have a NuGet release! https://www.nuget.org/packages/RDKit2DotNet/2017.9.1-alpha Notes: 1. This is a prerelase, the number of C# tests is vanishingly small 2. x64 only for now, you'll need to change AnyCPU targets to specifically target