[Rdkit-discuss] AllChem.ReplaceSubstructs question

2020-03-05 Thread Markus Metz
Hello: I am puzzled by the output from ReplaceSubstructs as it can produce two fragments. So I went and tried the examples in the manual and I observed this: The example in the intro manual with the recursive smarts pattern works as expected. repl = Chem.MolFromSmiles('OC') patt =

Re: [Rdkit-discuss] Anaconda and RDkit

2020-03-05 Thread Alan Kerstjens Medina
Hello Francesco, To quote your email: “But now, I'm not in Python. So I type py” Is this a typo? I’m not aware of the Python interpreter launching when you type “py”. If it does you may have defined an alias and you may be launching a different Python executable. If you’re using the Anaconda3

Re: [Rdkit-discuss] Are any of the UGM talks recorded?

2020-03-05 Thread Jennifer Wei via Rdkit-discuss
OK Thanks, I'll just have to try and come next time then. On Thu, Mar 5, 2020 at 3:50 AM Greg Landrum wrote: > Hi Jennifer, > > We don't have recordings of any of the UGM presentations. Sorry. > > -greg > > > On Wed, Mar 4, 2020 at 6:57 PM Jennifer Wei via Rdkit-discuss < >

Re: [Rdkit-discuss] Anaconda and RDkit

2020-03-05 Thread David Cosgrove
Of no help to Francesco whatsoever, but to save anyone else the bother... I’ve just taken the “from __future__...” bit out of the getting started docs in the PR I have open at the moment. It doesn’t seem worth its own PR but it needs to be acknowledged that we are now in the future . Dave On

Re: [Rdkit-discuss] Anaconda and RDkit

2020-03-05 Thread Jenny h
Hi Francesco, being new in the field everything can be confusing especially with conda ;) Just to make it clear: do you have a folder named RDKit in C://? If so just deleted the folder and it should be working. (A student of mine did the Same) To clarify: anaconda installs RDKit from an online

[Rdkit-discuss] Anaconda and RDkit

2020-03-05 Thread Francesco Coppola
Hi, I'm Francesco Coppola a recent graduate student in Medicinal Chemistry in Italy. Now I'm in Manchester and I'm doing a traineeship in computational chemistry. During my thesis work, I deal with Docking programs (and they always had an interface), now instead I'm trying to work with Python,

Re: [Rdkit-discuss] Are any of the UGM talks recorded?

2020-03-05 Thread Greg Landrum
Hi Jennifer, We don't have recordings of any of the UGM presentations. Sorry. -greg On Wed, Mar 4, 2020 at 6:57 PM Jennifer Wei via Rdkit-discuss < rdkit-discuss@lists.sourceforge.net> wrote: > Hi All, > > I was wondering if any of the UGM talks are recorded. I'm particularly > interested in