[Rdkit-discuss] [RDKit-Discuss]: Aromatic Heavy Atoms

2013-07-26 Thread Christos Kannas
Dear RDKiters, I'm creating a descriptor for estimating water solubility (clogSw) base on the following article of Delaney (doi:10.1021/ci034243x). J. S. Delaney, “ESOL: Estimating Aqueous Solubility Directly from Molecular Structure,” *Journal of Chemical Information and Modeling*, vol. 44,

Re: [Rdkit-discuss] [RDKit-Discuss]: Aromatic Heavy Atoms

2013-07-26 Thread Greg Landrum
Hi Christos, On Friday, July 26, 2013, Christos Kannas wrote: One of the descriptors used is Aromatic Proportion, that is the proportion of heavy atoms of the molecule that are in aromatic ring. So in order to find the aromatic heavy atoms I use GetSubstructMatches(...) with query SMARTS