Re: [Rdkit-discuss] Are the path-based fingerprints formally described in the scientific literature?

2021-05-19 Thread Greg Landrum
Hi Francois, On Thu, May 20, 2021 at 3:19 AM Francois Berenger wrote: > > The other day, I was looking for a paper describing them > but the only thing I found was a reference to some Daylight > product. > > I know there is a paper (maybe several in fact) for ECFP for example. > Weren't the

Re: [Rdkit-discuss] Problem finding potential stereo-centres in bridged bicyclics involving 4-membered rings?

2021-05-19 Thread James Davidson
Hi Greg, Thanks for the response (and sorry to be the bearer of bad news!). Issue added: https://github.com/rdkit/rdkit/issues/4155 Kind regards James From: Greg Landrum Sent: 19 May 2021 14:59 To: James Davidson Cc: rdkit-discuss@lists.sourceforge.net Subject: Re: [Rdkit-discuss] Problem

Re: [Rdkit-discuss] Problem finding potential stereo-centres in bridged bicyclics involving 4-membered rings?

2021-05-19 Thread Greg Landrum
Thanks James! On Wed, 19 May 2021 at 17:40, James Davidson wrote: > Hi Greg, > > > > Thanks for the response (and sorry to be the bearer of bad news!). > > Issue added: https://github.com/rdkit/rdkit/issues/4155 > > > > Kind regards > > > > James > > > > *From:* Greg Landrum > *Sent:* 19 May

[Rdkit-discuss] Are the path-based fingerprints formally described in the scientific literature?

2021-05-19 Thread Francois Berenger
Dear list, The other day, I was looking for a paper describing them but the only thing I found was a reference to some Daylight product. I know there is a paper (maybe several in fact) for ECFP for example. Weren't the path-based FPs formally described somewhere? Thanks a lot, F.

[Rdkit-discuss] Problem finding potential stereo-centres in bridged bicyclics involving 4-membered rings?

2021-05-19 Thread James Davidson
Dear All, I've got a strong suspicion that what I am seeing is related to the open issue 3490 (https://github.com/rdkit/rdkit/issues/3490), but as I can't seem to find a mention of a non-spiro problem then I thought I would share. Tested in 2020.09.4 and 2021.03.2 with the same result.

Re: [Rdkit-discuss] Problem finding potential stereo-centres in bridged bicyclics involving 4-membered rings?

2021-05-19 Thread Greg Landrum
Hi James, I don't think that's the same bug as #3490. I think it's something different; "yay". ;-) It would be great if you could file a github issue for this. Thanks, -greg On Wed, May 19, 2021 at 3:20 PM James Davidson wrote: > Dear All, > > > > I’ve got a strong suspicion that what I am