Re: [Rdkit-discuss] kekulizing carbazole

2010-11-01 Thread Paul Emsley
On 31/10/10 14:18, Greg Landrum wrote: Hi Paul, On Sun, Oct 31, 2010 at 12:09 PM, Paul Emsley paul.ems...@bioch.ox.ac.uk wrote: I'm running into problems when I try to kekulize carbazole. The description I start with is that all the bonds are marked as Bond::AROMATIC and I do

Re: [Rdkit-discuss] kekulizing carbazole

2010-11-01 Thread Greg Landrum
Hi Paul, On Mon, Nov 1, 2010 at 3:54 PM, Paul Emsley paul.ems...@bioch.ox.ac.uk wrote: For the record, I would like to describe how I proceeded in the light of your reply. My starting point to construct an RWMol is an mmCIF restraints file.  As well as containing description of the bonds