Re: [Rdkit-discuss] RDkit cartridge on Amazon RDS

2015-05-12 Thread Tim Dudgeon
It would indeed be cool, but it might be too specialised for them. I will follow up and ask if you'd like, but I'd need a bit more information about what would be involved. Tim On 12/05/2015 02:53, Greg Landrum wrote: Hi Tim, On Mon, May 11, 2015 at 6:25 PM, Tim Dudgeon

Re: [Rdkit-discuss] rdkit and emscripten

2015-05-12 Thread Giuseppe Marco Randazzo
Hello Guillaume, you have a vector of unsigned int SparseIntVectboost::uint32_t” which is a vector of unsigned int. Looking at the C++ public member function you can find “getVal(int index)” which give to you the correspondent bit as integer value. So, you can iterate and convert to a string

Re: [Rdkit-discuss] rdkit and emscripten

2015-05-12 Thread Guillaume GODIN
Dear Marco, I find a solution! I prepare a github to explain it best regards, Dr. Guillaume GODIN Project Manager Innovation CORPORATE RD DIVISION DIRECT LINE +41 (0)22 780 3645 MOBILE +41 (0)79 536 1039 Firmenich SA RUE DES JEUNES 1 | CASE POSTALE 239 | CH-1211 GENEVE 8

Re: [Rdkit-discuss] rdkit and emscripten

2015-05-12 Thread Giuseppe Marco Randazzo
I thinks is a linking problem. Do you link libSmilesParse.so? from your line it seems that you link only -Llib/libGraphMol.so -Llib/libDescriptors.so -Llib/libRDGeneral.so -Llib/libRDGeometryLib.so Marco On 12 May 2015, at 12:53, Guillaume GODIN guillaume.go...@firmenich.com wrote:

Re: [Rdkit-discuss] licence type

2015-05-12 Thread Greg Landrum
Dear Guillaume, On Wed, May 13, 2015 at 6:35 AM, Guillaume GODIN guillaume.go...@firmenich.com wrote: Dear All, I would like to port RDKit to nodejs. What is the licence type I should take ? The RDKit's license, the new BSD license, is compatible with all open-source licenses that I'm

Re: [Rdkit-discuss] rdkit and emscripten

2015-05-12 Thread Guillaume GODIN
Dear Marco, Thanks for the tips. I now look at expose the RDKit class directly in JS using emscripten. I have a issue there : //--** code of the rdmol.cpp #include emscripten/bind.h #include GraphMol/ROMol.h #include GraphMol/SmilesParse/SmilesParse.h #include

[Rdkit-discuss] Posters at the RDKit UGM (Zürich, Sep 2-4 2015)

2015-05-12 Thread Nikolas Fechner
Dear all, This year’s RDKit UGM will offer for the first time the opportunity to present posters. If you would like to bring a poster please send Sereina and me an email. You do not have to provide a title right now, but as the available space is limited, poster slots will be allocated on a