Dear colleagues, I got some questions about atom indexing. Just wonder if you could help me?
1. In m3=Chem.CombineMols(m1,m2) , is it guaranteed that the atom indices in m3 is equivalent to the indices in m1 followed by the indices in m2? 2. If I construct an editable mol from m1, is it that the atomic indices in the editable mol is equivalent to that in m1? And when I convert the editable mol back, suppose the atom indexing is also preserved? 3. Same as #2, but for an RWMol instead of an editable mol. 4. If I delete an "F" atom from an editable mol, is there a way to mark the atom in the new mol that was originally bonded to the "F"? I mean, if I get its atomic index before the deletion, suppose it won't be preserved. 5. Similar to #4, but for DeleteSubstructs. Alternatively, if there is a way to mark atoms, I don't need the atom indices anyway. Thank you! Ling
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