Re: [Rdkit-discuss] RDKit Linux install error

Thank you so much for your help, Paolo! It was PIL that was missing. I installed it and now all tests passed. Thanks again, Hong On Sun, Nov 29, 2015 at 4:25 PM, Paolo Tosco wrote: > Hi Hong, > > try re-running the failing test using the -V command line switch - it'll >

Re: [Rdkit-discuss] RDKit Linux install error

> Hi Greg, > > Thank you so much for pointing out the problem! I removed the old directory > and re-did the whole process. Now the build worked! > The only thing left is: when I ran ctest, one test failed (please see below): > > "99% tests passed, 1 tests failed out of 90 > > Total Test time

Re: [Rdkit-discuss] RDKit Linux install error

Maybe slightly OT, but if you just need the binaries I compiled RPMs for CentOS 7 here: https://copr.fedoraproject.org/coprs/giallu/rdkit On Thu, Nov 26, 2015 at 5:16 PM, Hong Wang wrote: > Hi Greg, > > Thanks for your reply. > After the first pwd, it showed

Re: [Rdkit-discuss] RDKit Linux install error

Hi Greg, Attached is the cmake output file. Many thanks. Best, Hong On Thu, Nov 26, 2015 at 12:21 AM, Greg Landrum wrote: > Hi Hong, > > I appreciate that you are trying to make the bug report compact and > minimal, but in this case more information is really required

Re: [Rdkit-discuss] RDKit Linux install error

Hi Hong, That looks like some kind of log file and might be useful later. The information I was hoping for was what is printed in the console when you run cmake. For example, this is the beginning of what I see when I run cmake in a newly created build directory: ~/RDKit_git/build/foo > cmake ../

Re: [Rdkit-discuss] RDKit Linux install error

Hi Hong, if /usr/local/src/RDKit_2015_03_1 is the top directory of the RDKit distribution then I think you should probably move your build one directory up and run cmake from inside /usr/local/src/RDKit_2015_03_1/build/ (instead of /usr/local/src/RDKit_2015_03_1/rdkit/build/). Best, Riccardo

Re: [Rdkit-discuss] RDKit Linux install error

Hi Greg, Sorry for the misunderstanding. Here is what was shown when I ran cmake. Thanks, Hong On Thu, Nov 26, 2015 at 8:40 AM, Greg Landrum wrote: > Hi Hong, > > That looks like some kind of log file and might be useful later. The > information I was hoping for was

Re: [Rdkit-discuss] RDKit Linux install error

Hi Riccardo, Thanks for your reply. I tried what you suggested. But I got the following error: "CMake Error: The source directory "/usr/local/src" does not appear to contain CMakeLists.txt." Best, Hong On Thu, Nov 26, 2015 at 8:49 AM, Riccardo Vianello < riccardo.viane...@gmail.com> wrote: >

Re: [Rdkit-discuss] RDKit Linux install error

Hi Hong, I believe that Riccardo has hit the nail exactly on the head, but that you are still either executing the cmake command from the wrong directory or executing the wrong cmake command. You need to create a directory /usr/local/src/RDKit_2015_03_1/build, cd into that directory, and run

Re: [Rdkit-discuss] RDKit Linux install error

Hi Greg, That is what I did: mkdir build (under /usr/local/src/RDKit_2015_03_1/) cd build cmake .. But I got the error message ""CMake Error: The source directory "/usr/local/src" does not appear to contain CMakeLists.txt." I also followed the instructions in RDKit install documentation for

Re: [Rdkit-discuss] RDKit Linux install error

On Thu, Nov 26, 2015 at 4:29 PM, Hong Wang wrote: > > That is what I did: > mkdir build (under /usr/local/src/RDKit_2015_03_1/) > cd build > cmake .. > > But I got the error message ""CMake Error: The source directory > "/usr/local/src" does not appear to contain

Re: [Rdkit-discuss] RDKit Linux install error

Hi Greg, Thanks for your reply. After the first pwd, it showed "/usr/local/src/RDKit_2015_03_1/build" After cmake .., I got that error. After the second pwd, it also showed "/usr/local/src/RDKit_2015_03_1/build". Thanks, Hong On Thu, Nov 26, 2015 at 10:31 AM, Greg Landrum

Re: [Rdkit-discuss] RDKit Linux install error

Hi Hong, I appreciate that you are trying to make the bug report compact and minimal, but in this case more information is really required for us to be able to diagnose the problem. Please remove everything in your build directory, run cmake again, and then attach the complete output from cmake

[Rdkit-discuss] RDKit Linux install error

I am trying to install RDKit on RedHat 7.1 linux, but I got the following errors: "CMake Error at CMakeLists.txt:12 (install): install FILES given no DESTINATION! CMake Error at CMakeLists.txt: 15 (add_pytest): Unknown CMake command "add_pytest" I was building under the directory

Re: [Rdkit-discuss] RDKit Linux install error

Hi, Please let us know what commands you executed to run cmake and build the code Best, -greg On Wed, Nov 25, 2015 at 4:21 AM, wrote: > I am trying to install RDKit on RedHat 7.1 linux, but I got the following > errors: > > "CMake Error at CMakeLists.txt:12 (install): >