Hello,
I am struggling to build RDKit on Cygwin, under 32-bit Windows 7,
using gcc 4.9.2, boost 1.55 and python 2.7.8, with the standard
options:
cmake .. && make && make install
The building itself did not raise any errors, but the python tests
fail, for example:
$ python -v -c 'from rdkit import Chem'
...
import rdkit.Chem # precompiled from /home/m/RDKit/rdkit/Chem/__init__.pyc
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/home/m/RDKit/rdkit/Chem/__init__.py", line 18, in <module>
from rdkit import rdBase
ImportError: cannot import name rdBase
$RDBASE and $RDBASE/lib are in the PATH and PYTHONPATH. To be sure the
dlls are found, I even copied them to /bin. I am pretty sure that
paths are OK.
There is, however, no rdBase.so or anything like that present in $RDBASE/rdkit:
$ ls ~/RDKit/rdkit
__init__.py _py2_pickle.py Avalon CMakeLists.txt DataStructs
DistanceGeometry ForceField ML rdBase.pyd RDConfig.pyc
RDPaths.py SimDivFilters six.pyc test_list.py utils
__init__.pyc _py2_pickle.pyc Chem DataManip Dbase
epydoc.config Geometry Numerics RDConfig.py RDLogger.py
RDRandom.py six.py sping TestRunner.py VLib
$ ls ~/RDKit/build/rdkit/
Chem cmake_install.cmake CMakeFiles CTestTestfile.cmake DataManip
DataStructs DistanceGeometry ForceField Geometry Makefile ML
Numerics rdBase.pyd RDPaths.py SimDivFilters
$ locate rdBase
/home/m/RDKit/build/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir
/home/m/RDKit/build/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make
/home/m/RDKit/build/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/cmake_clean.cmake
/home/m/RDKit/build/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/CXX.includecache
/home/m/RDKit/build/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend.internal
/home/m/RDKit/build/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend.make
/home/m/RDKit/build/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake
/home/m/RDKit/build/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/flags.make
/home/m/RDKit/build/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/link.txt
/home/m/RDKit/build/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/progress.make
/home/m/RDKit/build/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o
/home/m/RDKit/build/rdkit/rdBase.pyd
/home/m/RDKit/rdkit/rdBase.pyd
What else could be wrong?
Thanks,
Michal
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