Re: [Rdkit-discuss] generate atom names?

2012-04-11 Thread Paul Emsley
On 10/04/12 12:01, Greg Landrum wrote:
 On Tue, Apr 10, 2012 at 11:07 AM, Paul Emsley
 paul.ems...@bioch.ox.ac.uk  wrote:
 (Just making sure I have not missed anything...)

 Is there a function that generates unique atom names (using
 at-setProp(name, name) presumably) for a given molecule? (I don't see
 such a thing).
 There is not. The corresponding python is pretty easy,

OK, thanks.  I start to dip my toe in pythonic-rdkit waters...

 but there's not
 anything that's currently part of the RDKit.

 What are you interested in doing with the names?



making pdbx restraints for macromolecular refinement and model-building.

Cheers,

Paul.



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Re: [Rdkit-discuss] generate atom names?

2012-04-10 Thread Greg Landrum
Dear Paul,

On Tue, Apr 10, 2012 at 11:07 AM, Paul Emsley
paul.ems...@bioch.ox.ac.uk wrote:

 (Just making sure I have not missed anything...)

 Is there a function that generates unique atom names (using
 at-setProp(name, name) presumably) for a given molecule? (I don't see
 such a thing).

There is not. The corresponding python is pretty easy, but there's not
anything that's currently part of the RDKit.

What are you interested in doing with the names?

-greg

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