Re: [Rdkit-discuss] mol2 file with atom type that is suitable for amber

2020-08-07 Thread Paul Emsley
On 05/08/2020 19:44, Nikhil Maroli wrote: I wanted to add atom types in mol2 file which is readable for amber/leap. Is it possible with rdkit? I did some work on CCP4 and Amber atom types a few years ago and then converted to parm@Frosst (which I found to be a lot harder) but not to the

Re: [Rdkit-discuss] mol2 file with atom type that is suitable for amber

2020-08-07 Thread Greg Landrum
Hi Nikhil, The RDKit cannot create mol2 files, so I’m afraid it can’t help at all. Maybe take a look at openbabel or ambertools for this -greg On Wed, 5 Aug 2020 at 20:47, Nikhil Maroli wrote: > Dear all, > I wanted to add atom types in mol2 file which is readable for amber/leap. > Is it