[Rdkit-discuss] pseudo-atoms, Rest, groups

2017-06-28 Thread Paul Zierep via Rdkit-discuss
I was wondering if it is possible, to create molecules with pseudo-atoms, for example the name of a prosthetic group: I know that 'O=C(O)CC(=O)S[*]' works, but I would like to change the * with something like 'CoA' or 'R'. I know about the protein hack http://www.wildcardconsulting.dk/useful-info

[Rdkit-discuss] Morgan Fingerprint one-to-one relation

2019-11-20 Thread Paul Zierep via Rdkit-discuss
Hi, in the original paper of ECFPs (Rogers, D.; Hahn, M. “Extended-Connectivity Fingerprints.” *J. Chem. Inf. and Model.* *50*:742-54 (2010).); it says, " that the relationship between fingerprint features and the substructures may not always be one-to-one, " (especially for the FCFPs but also the

[Rdkit-discuss] Figure copyright

2020-07-01 Thread Paul Zierep via Rdkit-discuss
Dear Rdkit Community, I would like to use figures and potential scripts from the rdkit manual in my PhD thesis. Is there a copyright requirement I should be aware of for reproduction of the figures ? Of course I would cite rdkit accordingly. Best regards, Paul _