Author: tlinnet
Date: Mon Jun 16 22:11:41 2014
New Revision: 24005
URL: http://svn.gna.org/viewcvs/relax?rev=24005view=rev
Log:
Fix for documentation in ns mmq 2site/sq/dq/zq/mq.
Now explains which dimension data should be in.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up
Author: tlinnet
Date: Mon Jun 16 22:11:33 2014
New Revision: 24001
URL: http://svn.gna.org/viewcvs/relax?rev=24001view=rev
Log:
Changed unit test of MMQ CR72 to pass.
dw needs to be of numpy structure.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
Author: tlinnet
Date: Mon Jun 16 22:11:38 2014
New Revision: 24003
URL: http://svn.gna.org/viewcvs/relax?rev=24003view=rev
Log:
Modified lib function for NS MMQ 2site, to have looping over spins and
frequencies inside lib function.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up
Author: tlinnet
Date: Mon Jun 16 22:11:56 2014
New Revision: 24007
URL: http://svn.gna.org/viewcvs/relax?rev=24007view=rev
Log:
Changed the calculation of inner product in model ns cpmg 2site 3d.
The out argument of numpy.dot is buggy, and should not be used.
Task #7807 (https://gna.org/task
Author: tlinnet
Date: Tue Jun 17 09:18:19 2014
New Revision: 24008
URL: http://svn.gna.org/viewcvs/relax?rev=24008view=rev
Log:
Adding last profiling information for model CR72.
Modified:
trunk/test_suite/shared_data/dispersion/profiling/profiling_cr72.txt
[This mail would be too long
Author: tlinnet
Date: Tue Jun 17 09:18:39 2014
New Revision: 24010
URL: http://svn.gna.org/viewcvs/relax?rev=24010view=rev
Log:
Added missing instances of cleaning the data.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified
Author: tlinnet
Date: Tue Jun 17 09:18:24 2014
New Revision: 24009
URL: http://svn.gna.org/viewcvs/relax?rev=24009view=rev
Log:
Added systemtest for model LM63 3 site.
According to results folder in:
test_suite/shared_data/dispersion/Hansen/relax_results/LM63 3-site
This should pass.
But i
Author: tlinnet
Date: Tue Jun 17 09:18:41 2014
New Revision: 24011
URL: http://svn.gna.org/viewcvs/relax?rev=24011view=rev
Log:
Bug fix for model LM63 3site. The index si has to be used to extract data to
lib function.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion
Author: tlinnet
Date: Tue Jun 17 09:20:13 2014
New Revision: 24012
URL: http://svn.gna.org/viewcvs/relax?rev=24012view=rev
Log:
Merged revisions 23881,23945,24008-24009 via svnmerge from
svn+ssh://tlin...@svn.gna.org/svn/relax/trunk
r23881 | bugman | 2014-06-12 14:47:31 +0200 (Thu
Author: tlinnet
Date: Tue Jun 17 09:33:32 2014
New Revision: 24013
URL: http://svn.gna.org/viewcvs/relax?rev=24013view=rev
Log:
Temporary added systemtest: test_korzhnev_2005_all_data_disp_speed_bug.
This makes a minimisation with 1 iteration, and so will give the chi2 value at
the preset
Author: tlinnet
Date: Tue Jun 17 09:47:09 2014
New Revision: 24014
URL: http://svn.gna.org/viewcvs/relax?rev=24014view=rev
Log:
Updated documentation on dimensionality of numpy array num_points.
They are in dimension [NE][NS][[NM][NO], where oi gives the number of
dispersion points
Author: tlinnet
Date: Tue Jun 17 11:56:45 2014
New Revision: 24019
URL: http://svn.gna.org/viewcvs/relax?rev=24019view=rev
Log:
Moved the cleaning of data points and replacing of values of out loop for model
ns mmq 2site.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion
Author: tlinnet
Date: Tue Jun 17 11:56:43 2014
New Revision: 24018
URL: http://svn.gna.org/viewcvs/relax?rev=24018view=rev
Log:
Fix for systemtest: test_korzhnev_2005_all_data
The masking for replacing values was wrong.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion
Author: tlinnet
Date: Tue Jun 17 12:20:12 2014
New Revision: 24022
URL: http://svn.gna.org/viewcvs/relax?rev=24022view=rev
Log:
Fix for structure cleaning and value replacing for model mmq CR72.
System test: test_korzhnev_2005_all_data
revealed how this should be done properly.
Task #7807
Author: tlinnet
Date: Tue Jun 17 12:20:15 2014
New Revision: 24023
URL: http://svn.gna.org/viewcvs/relax?rev=24023view=rev
Log:
Fix for systemtest test_korzhnev_2005_all_data_disp_speed_bug.
The precision is lowered, and now matches the original systemtest.
Task #7807 (https://gna.org/task
Author: tlinnet
Date: Tue Jun 17 12:32:34 2014
New Revision: 24024
URL: http://svn.gna.org/viewcvs/relax?rev=24024view=rev
Log:
Removed systemtest test_hansen_cpmg_data_to_lm63_3site.
This was a temporary implementation and has been replaced with systemtest:
Relax_disp.test_lm63_3site_synthetic
Author: tlinnet
Date: Tue Jun 17 12:33:27 2014
New Revision: 24025
URL: http://svn.gna.org/viewcvs/relax?rev=24025view=rev
Log:
Merged revisions 24020-24021,24024 via svnmerge from
svn+ssh://tlin...@svn.gna.org/svn/relax/trunk
r24020 | bugman | 2014-06-17 12:07:35 +0200 (Tue, 17 Jun
Author: tlinnet
Date: Tue Jun 17 13:07:40 2014
New Revision: 24026
URL: http://svn.gna.org/viewcvs/relax?rev=24026view=rev
Log:
Replaced index to numpy array from example [0][si][mi][oi] to [0, si, mi, oi].
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
Author: tlinnet
Date: Tue Jun 17 13:07:42 2014
New Revision: 24027
URL: http://svn.gna.org/viewcvs/relax?rev=24027view=rev
Log:
More replacing of numpy index.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified:
branches
Author: tlinnet
Date: Tue Jun 17 14:53:47 2014
New Revision: 24032
URL: http://svn.gna.org/viewcvs/relax?rev=24032view=rev
Log:
Documentation fix, where a double bracket [[ has been copied into all lib
functions.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
Author: tlinnet
Date: Tue Jun 17 14:53:52 2014
New Revision: 24035
URL: http://svn.gna.org/viewcvs/relax?rev=24035view=rev
Log:
Reorded the lib function for ns mmq 3site to use higher dimensional data.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered
Author: tlinnet
Date: Tue Jun 17 14:53:54 2014
New Revision: 24036
URL: http://svn.gna.org/viewcvs/relax?rev=24036view=rev
Log:
Documentation fix for which dimensionality number of points have.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered
Author: tlinnet
Date: Tue Jun 17 14:53:49 2014
New Revision: 24033
URL: http://svn.gna.org/viewcvs/relax?rev=24033view=rev
Log:
More fixes for numpy index in lib functions.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified
Author: tlinnet
Date: Tue Jun 17 14:53:50 2014
New Revision: 24034
URL: http://svn.gna.org/viewcvs/relax?rev=24034view=rev
Log:
Restructured target function for ns mmq 3site to the new API structure of
higher dimensional data.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up
Author: tlinnet
Date: Tue Jun 17 14:57:33 2014
New Revision: 24037
URL: http://svn.gna.org/viewcvs/relax?rev=24037view=rev
Log:
Merged revisions 24028 via svnmerge from
svn+ssh://tlin...@svn.gna.org/svn/relax/trunk
r24028 | bugman | 2014-06-17 14:03:14 +0200 (Tue, 17 Jun 2014) | 6
Author: tlinnet
Date: Tue Jun 17 15:08:26 2014
New Revision: 24038
URL: http://svn.gna.org/viewcvs/relax?rev=24038view=rev
Log:
Documentation fix for the initial data structure of cpmg_frqs, spin_lock_nu1,
r1.
They were incorrect.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up
Author: tlinnet
Date: Tue Jun 17 15:49:54 2014
New Revision: 24039
URL: http://svn.gna.org/viewcvs/relax?rev=24039view=rev
Log:
Fix for shortening the variables names.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified:
branches
Author: tlinnet
Date: Tue Jun 17 16:51:47 2014
New Revision: 24042
URL: http://svn.gna.org/viewcvs/relax?rev=24042view=rev
Log:
First attempt to implement lib function for ns r1rho 2site.
But it does not work yet.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
Author: tlinnet
Date: Tue Jun 17 16:51:45 2014
New Revision: 24041
URL: http://svn.gna.org/viewcvs/relax?rev=24041view=rev
Log:
First attempt to implement target function for ns_r1rho_2site.
But it does not work yet.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion
Author: tlinnet
Date: Tue Jun 17 17:06:56 2014
New Revision: 24044
URL: http://svn.gna.org/viewcvs/relax?rev=24044view=rev
Log:
Merged revisions 24040,24043 via svnmerge from
svn+ssh://tlin...@svn.gna.org/svn/relax/trunk
r24040 | bugman | 2014-06-17 15:56:47 +0200 (Tue, 17 Jun 2014
Author: tlinnet
Date: Tue Jun 17 18:24:27 2014
New Revision: 24050
URL: http://svn.gna.org/viewcvs/relax?rev=24050view=rev
Log:
Merged revisions 24047-24049 via svnmerge from
svn+ssh://tlin...@svn.gna.org/svn/relax/trunk
r24047 | bugman | 2014-06-17 17:57:06 +0200 (Tue, 17 Jun 2014
Author: tlinnet
Date: Tue Jun 17 18:46:01 2014
New Revision: 24052
URL: http://svn.gna.org/viewcvs/relax?rev=24052view=rev
Log:
Merged revisions 24051 via svnmerge from
svn+ssh://tlin...@svn.gna.org/svn/relax/trunk
r24051 | bugman | 2014-06-17 18:27:39 +0200 (Tue, 17 Jun 2014) | 6
Author: tlinnet
Date: Tue Jun 17 19:04:51 2014
New Revision: 24053
URL: http://svn.gna.org/viewcvs/relax?rev=24053view=rev
Log:
Fatal fix for calling inv_relax_time from relax_time variable.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis
Author: tlinnet
Date: Tue Jun 17 19:08:19 2014
New Revision: 24054
URL: http://svn.gna.org/viewcvs/relax?rev=24054view=rev
Log:
Removal of the temporary offset argument.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified
Author: tlinnet
Date: Tue Jun 17 19:11:07 2014
New Revision: 24055
URL: http://svn.gna.org/viewcvs/relax?rev=24055view=rev
Log:
Documentation fix for the dimensionality of the input arrays.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis
Author: tlinnet
Date: Tue Jun 17 19:27:10 2014
New Revision: 24056
URL: http://svn.gna.org/viewcvs/relax?rev=24056view=rev
Log:
Implemented the target function for ns r1rho 3site.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified
Author: tlinnet
Date: Tue Jun 17 19:27:12 2014
New Revision: 24057
URL: http://svn.gna.org/viewcvs/relax?rev=24057view=rev
Log:
Implemented the lib function for ns r1rho 3site.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified
Author: tlinnet
Date: Tue Jun 17 20:26:37 2014
New Revision: 24059
URL: http://svn.gna.org/viewcvs/relax?rev=24059view=rev
Log:
Implemented target function for LM63 3site.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified
Author: tlinnet
Date: Tue Jun 17 20:26:41 2014
New Revision: 24061
URL: http://svn.gna.org/viewcvs/relax?rev=24061view=rev
Log:
Removed the number of disp points in target function for LM63 3site, since it
is no Ãlonger used,
but have been replaced with mask replacements.
Task #7807 (https
Author: tlinnet
Date: Tue Jun 17 20:26:39 2014
New Revision: 24060
URL: http://svn.gna.org/viewcvs/relax?rev=24060view=rev
Log:
Implemented the lib function for LM63 3site, for higher dimensional data.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered
Author: tlinnet
Date: Wed Jun 18 09:25:49 2014
New Revision: 24064
URL: http://svn.gna.org/viewcvs/relax?rev=24064view=rev
Log:
Removed superfluous check, after the returned data is now in right structure.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
Author: tlinnet
Date: Wed Jun 18 09:25:48 2014
New Revision: 24063
URL: http://svn.gna.org/viewcvs/relax?rev=24063view=rev
Log:
Used the new class function: get_back_calc(), to get the data in the right
structures when interpolating for graphs.
Task #7807 (https://gna.org/task/index.php?7807
Author: tlinnet
Date: Wed Jun 18 09:25:45 2014
New Revision: 24062
URL: http://svn.gna.org/viewcvs/relax?rev=24062view=rev
Log:
Implemented class function in target class, to return back_calc values as list
of lists.
This is the back and forth conversion between the data structures implemented
Author: tlinnet
Date: Wed Jun 18 09:41:11 2014
New Revision: 24065
URL: http://svn.gna.org/viewcvs/relax?rev=24065view=rev
Log:
Made changes to the dir argument of systemtest Relax_disp.test_r1rho_kjaergaard.
This is to prepare for:
sr #3124 (https://gna.org/support/?3124): Grace graphs
Author: tlinnet
Date: Wed Jun 18 10:30:02 2014
New Revision: 24071
URL: http://svn.gna.org/viewcvs/relax?rev=24071view=rev
Log:
Split systemtest test_r1rho_kjaergaard into test_r1rho_kjaergaard_auto and
test_r1rho_kjaergaard_man.
This is to test use of the manual way to analyse.
Task #7807
Author: tlinnet
Date: Wed Jun 18 10:30:00 2014
New Revision: 24070
URL: http://svn.gna.org/viewcvs/relax?rev=24070view=rev
Log:
Renamed systemtes test_r1rho_kjaergaard to test_r1rho_kjaergaard_auto.
This corresponds to the use of the automatic analysis method.
Task #7807 (https://gna.org/task
Author: tlinnet
Date: Wed Jun 18 10:35:42 2014
New Revision: 24073
URL: http://svn.gna.org/viewcvs/relax?rev=24073view=rev
Log:
Implemented systemtest test_r1rho_kjaergaard_missing_r1, for safety check if R1
data is not loaded.
The systemtest passes, so target function is safe.
Task #7807
Author: tlinnet
Date: Wed Jun 18 10:44:04 2014
New Revision: 24075
URL: http://svn.gna.org/viewcvs/relax?rev=24075view=rev
Log:
Replaced double or triple hash-tags ## with single hash-tags #.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis
Author: tlinnet
Date: Wed Jun 18 10:49:10 2014
New Revision: 24076
URL: http://svn.gna.org/viewcvs/relax?rev=24076view=rev
Log:
Copyright fixes for all the models, where Troels E. Linnet have made changes to
make them functional for higher dimensional data.
Task #7807 (https://gna.org/task
Author: tlinnet
Date: Wed Jun 18 10:50:36 2014
New Revision: 24077
URL: http://svn.gna.org/viewcvs/relax?rev=24077view=rev
Log:
Copyright fix for model TSMFK01.
Sebastien Morin did not take part of implementing the TSMK01 modelÃ.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up
Author: tlinnet
Date: Wed Jun 18 11:37:12 2014
New Revision: 24081
URL: http://svn.gna.org/viewcvs/relax?rev=24081view=rev
Log:
Made the processor.return_object get the back_calc structure in the expected
order.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
Author: tlinnet
Date: Wed Jun 18 11:46:33 2014
New Revision: 24083
URL: http://svn.gna.org/viewcvs/relax?rev=24083view=rev
Log:
Merged revisions 24058 via svnmerge from
svn+ssh://tlin...@svn.gna.org/svn/relax/trunk
r24058 | bugman | 2014-06-17 19:46:10 +0200 (Tue, 17 Jun 2014) | 6
Author: tlinnet
Date: Wed Jun 18 15:44:58 2014
New Revision: 24091
URL: http://svn.gna.org/viewcvs/relax?rev=24091view=rev
Log:
Added DPL94 profiling script.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified:
branches
Author: tlinnet
Date: Wed Jun 18 15:58:31 2014
New Revision: 24092
URL: http://svn.gna.org/viewcvs/relax?rev=24092view=rev
Log:
Modified profiling script for TSMK01, to use correct parameters k_AB and r20a.
Or else, the lib functions is just calculating with zero?
Task #7807 (https://gna.org
Author: tlinnet
Date: Wed Jun 18 16:03:46 2014
New Revision: 24093
URL: http://svn.gna.org/viewcvs/relax?rev=24093view=rev
Log:
Changes to profiling script of ns_cpmg_2site_expanded.
The model does not have r20a and r20b, but only r2.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up
Author: tlinnet
Date: Wed Jun 18 16:07:10 2014
New Revision: 24094
URL: http://svn.gna.org/viewcvs/relax?rev=24094view=rev
Log:
Made changes to the profiling script of NS_CPMG_2SITE_3D.
Need to use the full model, when r2a and r2b is specified.
Task #7807 (https://gna.org/task/index.php?7807
Author: tlinnet
Date: Wed Jun 18 16:17:42 2014
New Revision: 24095
URL: http://svn.gna.org/viewcvs/relax?rev=24095view=rev
Log:
Changes to profiling script of ns expanded.
The unpacking can be removed.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
Author: tlinnet
Date: Wed Jun 18 16:33:46 2014
New Revision: 24096
URL: http://svn.gna.org/viewcvs/relax?rev=24096view=rev
Log:
Fix for the profiling script of NS cpmg 3D.
The model should also be speciffied to full.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion
Author: tlinnet
Date: Wed Jun 18 16:44:12 2014
New Revision: 24098
URL: http://svn.gna.org/viewcvs/relax?rev=24098view=rev
Log:
Copied profiling script of DPL94 to ns r1rho 2site.
Added:
branches/disp_spin_speed/test_suite/shared_data/dispersion/profiling/profiling_ns_r1rho_2site.py
Author: tlinnet
Date: Wed Jun 18 16:48:50 2014
New Revision: 24100
URL: http://svn.gna.org/viewcvs/relax?rev=24100view=rev
Log:
Added profiling script for NS R1rho 2site.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified
Author: tlinnet
Date: Wed Jun 18 17:11:24 2014
New Revision: 24103
URL: http://svn.gna.org/viewcvs/relax?rev=24103view=rev
Log:
Moved the Ãparter conversion in LM63 3site into the lib function.
This cleans up the target api function.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up
Author: tlinnet
Date: Wed Jun 18 17:12:50 2014
New Revision: 24104
URL: http://svn.gna.org/viewcvs/relax?rev=24104view=rev
Log:
Copied profiling script for DPL94 to TAP03.
Added:
branches/disp_spin_speed/test_suite/shared_data/dispersion/profiling/profiling_tap03.py
- copied
Author: tlinnet
Date: Wed Jun 18 17:13:47 2014
New Revision: 24105
URL: http://svn.gna.org/viewcvs/relax?rev=24105view=rev
Log:
Copied profiling script for DPL94 to TP02.
Added:
branches/disp_spin_speed/test_suite/shared_data/dispersion/profiling/profiling_tp02.py
- copied unchanged
Author: tlinnet
Date: Wed Jun 18 17:15:27 2014
New Revision: 24106
URL: http://svn.gna.org/viewcvs/relax?rev=24106view=rev
Log:
Copied profiling script for DPL94 to MP05.
Added:
branches/disp_spin_speed/test_suite/shared_data/dispersion/profiling/profiling_mp05.py
- copied unchanged
Author: tlinnet
Date: Wed Jun 18 17:16:24 2014
New Revision: 24107
URL: http://svn.gna.org/viewcvs/relax?rev=24107view=rev
Log:
Copied profiling script for DPL94 to M61.
Added:
branches/disp_spin_speed/test_suite/shared_data/dispersion/profiling/profiling_m61.py
- copied unchanged
Author: tlinnet
Date: Wed Jun 18 17:21:39 2014
New Revision: 24108
URL: http://svn.gna.org/viewcvs/relax?rev=24108view=rev
Log:
Modified profiling script for TAP03 to be used.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified
Author: tlinnet
Date: Wed Jun 18 17:23:44 2014
New Revision: 24109
URL: http://svn.gna.org/viewcvs/relax?rev=24109view=rev
Log:
Modified profiling script for TP02, to be used.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified
Author: tlinnet
Date: Wed Jun 18 17:27:54 2014
New Revision: 24110
URL: http://svn.gna.org/viewcvs/relax?rev=24110view=rev
Log:
Modified profiling script for MP05.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified:
branches
Author: tlinnet
Date: Wed Jun 18 17:31:55 2014
New Revision: 24111
URL: http://svn.gna.org/viewcvs/relax?rev=24111view=rev
Log:
Modified profiling script for M61.
This is the last one.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis
Author: tlinnet
Date: Wed Jun 18 17:39:08 2014
New Revision: 24113
URL: http://svn.gna.org/viewcvs/relax?rev=24113view=rev
Log:
Moved the parameter conversion of MMQ CR72 into lib function.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis
Author: tlinnet
Date: Wed Jun 18 17:52:07 2014
New Revision: 24114
URL: http://svn.gna.org/viewcvs/relax?rev=24114view=rev
Log:
Moved the paramter conversions of k_AB, k_BA and pB into lib function of NS MMQ
2site.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
Author: tlinnet
Date: Wed Jun 18 17:57:44 2014
New Revision: 24115
URL: http://svn.gna.org/viewcvs/relax?rev=24115view=rev
Log:
Moved the parameter conversion from target function to lib function for NS
r1rho 2site.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
Author: tlinnet
Date: Wed Jun 18 18:52:37 2014
New Revision: 24119
URL: http://svn.gna.org/viewcvs/relax?rev=24119view=rev
Log:
Moved the parameter conversion for ns mmq 3site into lib function.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered
Author: tlinnet
Date: Wed Jun 18 19:01:24 2014
New Revision: 24121
URL: http://svn.gna.org/viewcvs/relax?rev=24121view=rev
Log:
Moved the parameter conversion for r1rho 3site into lib function.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered
Author: tlinnet
Date: Wed Jun 18 19:03:08 2014
New Revision: 24122
URL: http://svn.gna.org/viewcvs/relax?rev=24122view=rev
Log:
Copied profiling script for CR72, so there is now a normal and a full version.
Added:
branches/disp_spin_speed/test_suite/shared_data/dispersion/profiling
Author: tlinnet
Date: Wed Jun 18 19:04:01 2014
New Revision: 24123
URL: http://svn.gna.org/viewcvs/relax?rev=24123view=rev
Log:
Copied profiling for b14 to normal and full model.
Added:
branches/disp_spin_speed/test_suite/shared_data/dispersion/profiling/profiling_b14.py
- copied
Author: tlinnet
Date: Wed Jun 18 19:10:13 2014
New Revision: 24125
URL: http://svn.gna.org/viewcvs/relax?rev=24125view=rev
Log:
Copied profiling script for cpmg 3D.
Added:
branches/disp_spin_speed/test_suite/shared_data/dispersion/profiling/profiling_ns_cpmg_2site_3D.py
- copied
Author: tlinnet
Date: Wed Jun 18 19:11:10 2014
New Revision: 24126
URL: http://svn.gna.org/viewcvs/relax?rev=24126view=rev
Log:
Copied profiling script for ns cpmg star.
Added:
branches/disp_spin_speed/test_suite/shared_data/dispersion/profiling/profiling_ns_cpmg_2site_star.py
Author: tlinnet
Date: Wed Jun 18 19:12:12 2014
New Revision: 24127
URL: http://svn.gna.org/viewcvs/relax?rev=24127view=rev
Log:
copied profiling script for no rex.
Added:
branches/disp_spin_speed/test_suite/shared_data/dispersion/profiling/profiling_norex.py
- copied unchanged from
Author: tlinnet
Date: Wed Jun 18 19:15:19 2014
New Revision: 24128
URL: http://svn.gna.org/viewcvs/relax?rev=24128view=rev
Log:
Modified profiling script for B14, to R20A=R20B.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified
Author: tlinnet
Date: Wed Jun 18 19:20:19 2014
New Revision: 24129
URL: http://svn.gna.org/viewcvs/relax?rev=24129view=rev
Log:
Removal of junk, and replacing func.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified:
branches
Author: tlinnet
Date: Wed Jun 18 19:20:21 2014
New Revision: 24130
URL: http://svn.gna.org/viewcvs/relax?rev=24130view=rev
Log:
Removal of junk from profiling script.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified:
branches
Author: tlinnet
Date: Wed Jun 18 19:25:31 2014
New Revision: 24132
URL: http://svn.gna.org/viewcvs/relax?rev=24132view=rev
Log:
Removal of junk from profiling script CR72 and making it work.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis
Author: tlinnet
Date: Wed Jun 18 19:25:29 2014
New Revision: 24131
URL: http://svn.gna.org/viewcvs/relax?rev=24131view=rev
Log:
Removal of junk for profiling script CR72 full.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified
Author: tlinnet
Date: Wed Jun 18 19:29:28 2014
New Revision: 24133
URL: http://svn.gna.org/viewcvs/relax?rev=24133view=rev
Log:
Removal of junk, and implementing NO REX profiling script.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis
Author: tlinnet
Date: Wed Jun 18 19:32:18 2014
New Revision: 24134
URL: http://svn.gna.org/viewcvs/relax?rev=24134view=rev
Log:
Implemented profiling script for NS CPMG 2site 3D.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified
Author: tlinnet
Date: Wed Jun 18 19:36:48 2014
New Revision: 24135
URL: http://svn.gna.org/viewcvs/relax?rev=24135view=rev
Log:
Implemented profiling script for NS CPMG STAR and STAR FULL.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis
Author: tlinnet
Date: Wed Jun 18 19:39:44 2014
New Revision: 24136
URL: http://svn.gna.org/viewcvs/relax?rev=24136view=rev
Log:
Copied profiling script to be used for LM63.
Added:
branches/disp_spin_speed/test_suite/shared_data/dispersion/profiling/profiling_lm63.py
- copied unchanged
Author: tlinnet
Date: Wed Jun 18 19:41:27 2014
New Revision: 24137
URL: http://svn.gna.org/viewcvs/relax?rev=24137view=rev
Log:
Copied profiling script to model IT99.
Added:
branches/disp_spin_speed/test_suite/shared_data/dispersion/profiling/profiling_it99.py
- copied unchanged from
Author: tlinnet
Date: Wed Jun 18 20:02:00 2014
New Revision: 24138
URL: http://svn.gna.org/viewcvs/relax?rev=24138view=rev
Log:
Fixed the packing out of paramter tex for global analysis in model IT99.
bug #0(https://gna.org/bugs/index.php?0): Unpacking of parameters for
global analysis
Author: tlinnet
Date: Wed Jun 18 20:03:09 2014
New Revision: 24139
URL: http://svn.gna.org/viewcvs/relax?rev=24139view=rev
Log:
Merged revisions 24138 via svnmerge from
svn+ssh://tlin...@svn.gna.org/svn/relax/trunk
r24138 | tlinnet | 2014-06-18 20:02:00 +0200 (Wed, 18 Jun 2014) | 3
Author: tlinnet
Date: Wed Jun 18 20:17:29 2014
New Revision: 24141
URL: http://svn.gna.org/viewcvs/relax?rev=24141view=rev
Log:
Implemented profiling script for LM63.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified:
branches
Author: tlinnet
Date: Wed Jun 18 20:17:26 2014
New Revision: 24140
URL: http://svn.gna.org/viewcvs/relax?rev=24140view=rev
Log:
Added profiling script for IT99.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified:
branches
Author: tlinnet
Date: Wed Jun 18 20:22:02 2014
New Revision: 24142
URL: http://svn.gna.org/viewcvs/relax?rev=24142view=rev
Log:
Moved the eta_scale = 2.0**(-3.0/2.0) out of lib function for mmq cr72, since
this is only needs to be computed once.
Task #7807 (https://gna.org/task/index.php?7807
Author: tlinnet
Date: Wed Jun 18 20:23:51 2014
New Revision: 24143
URL: http://svn.gna.org/viewcvs/relax?rev=24143view=rev
Log:
Spell fix in code for ns cpmg 2site expanded.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified
Author: tlinnet
Date: Wed Jun 18 20:28:05 2014
New Revision: 24144
URL: http://svn.gna.org/viewcvs/relax?rev=24144view=rev
Log:
Fix for missing comments.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified:
branches
Author: tlinnet
Date: Wed Jun 18 20:32:40 2014
New Revision: 24145
URL: http://svn.gna.org/viewcvs/relax?rev=24145view=rev
Log:
Fix for spaces aroung = outside functions.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis.
Modified
Author: tlinnet
Date: Wed Jun 18 20:41:35 2014
New Revision: 24146
URL: http://svn.gna.org/viewcvs/relax?rev=24146view=rev
Log:
Critical fix for wrong space inserted in ns mmq 3site mq.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
for Clustered analysis
Author: tlinnet
Date: Wed Jun 18 20:41:37 2014
New Revision: 24147
URL: http://svn.gna.org/viewcvs/relax?rev=24147view=rev
Log:
Fixed the input for unit test of mmq cr72.
The number of input parameters has been lowered.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion
Author: tlinnet
Date: Wed Jun 18 20:50:32 2014
New Revision: 24148
URL: http://svn.gna.org/viewcvs/relax?rev=24148view=rev
Log:
Added additional math domain checking in B14.
This is when v1c is less than 1.0.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models
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