Author: tlinnet
Date: Mon Oct 21 19:56:20 2013
New Revision: 21206
URL: http://svn.gna.org/viewcvs/relax?rev=21206view=rev
Log:
Added test data where both the spin-lock time, the spin lock offset and the
spin lock field is varied.
The data is published in:
A Folded Excited State of Ligand-Free
Author: tlinnet
Date: Tue Oct 22 13:09:22 2013
New Revision: 21210
URL: http://svn.gna.org/viewcvs/relax?rev=21210view=rev
Log:
Modified settings script for R1rho test dataset.
Modified:
branches/relax_disp/test_suite/shared_data/dispersion/Kjaergaard_et_al_2013/NOTES.txt
branches
Author: tlinnet
Date: Tue Oct 22 20:08:52 2013
New Revision: 21217
URL: http://svn.gna.org/viewcvs/relax?rev=21217view=rev
Log:
Correcting the R1rho settings script for the right calculation of the spin-lock
offset, omega_rf, in ppm when offset values are provided in Hz.
Modified
Author: tlinnet
Date: Tue Dec 3 16:57:35 2013
New Revision: 21746
URL: http://svn.gna.org/viewcvs/relax?rev=21746view=rev
Log:
Fix for Optimisation of Dr. Flemming Hansen's CPMG data to the 'NS CPMG 2-site
star' dispersion model.
Fix for bug #21322, (https://gna.org/bugs/?21322) - 5x Test
Author: tlinnet
Date: Tue Dec 3 16:58:33 2013
New Revision: 21747
URL: http://svn.gna.org/viewcvs/relax?rev=21747view=rev
Log:
Fix for Optimisation of the Korzhnev et al., 2005 15N DQ CPMG data using the
'MMQ 2-site' model.
Fix for bug #21322, (https://gna.org/bugs/?21322) - 5x Test suite fail
Author: tlinnet
Date: Tue Dec 3 16:59:37 2013
New Revision: 21748
URL: http://svn.gna.org/viewcvs/relax?rev=21748view=rev
Log:
Fix for Optimisation of the Korzhnev et al., 2005 15N MQ CPMG data using the
'MMQ 2-site' model.
Fix for bug #21322, (https://gna.org/bugs/?21322) - 5x Test suite fail
Author: tlinnet
Date: Tue Dec 3 17:00:43 2013
New Revision: 21749
URL: http://svn.gna.org/viewcvs/relax?rev=21749view=rev
Log:
Fix for Optimisation of the Korzhnev et al., 2005 15N ZQ CPMG data using the
'MMQ 2-site' model.
Fix for bug #21322, (https://gna.org/bugs/?21322) - 5x Test suite fail
Author: tlinnet
Date: Tue Dec 3 17:19:16 2013
New Revision: 21752
URL: http://svn.gna.org/viewcvs/relax?rev=21752view=rev
Log:
Fix for Optimisation of Dr. Flemming Hansen's CPMG data to the 'NS CPMG 2-site
star' dispersion model.
Changed so assertAlmostEqual matches 2 digits.
Fix for bug
Author: tlinnet
Date: Thu Dec 5 12:28:06 2013
New Revision: 21788
URL: http://svn.gna.org/viewcvs/relax?rev=21788view=rev
Log:
Fix for loading a seriesTab formatted intensity, and getting the ID for the
following GUI elements.
Fix for bug #21076, (https://gna.org/bugs/?21076) - When loading
Author: tlinnet
Date: Thu Dec 5 14:10:55 2013
New Revision: 21789
URL: http://svn.gna.org/viewcvs/relax?rev=21789view=rev
Log:
Implemented GUI test, which caches the bug.
Fix for bug #21076, (https://gna.org/bugs/?21076) - When loading a
multi-spectra NMRPipe seriesTab file through the GUI
Author: tlinnet
Date: Thu Dec 5 17:24:16 2013
New Revision: 21794
URL: http://svn.gna.org/viewcvs/relax?rev=21794view=rev
Log:
System test for sequence read expanded to include assertions of correct data.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044
Author: tlinnet
Date: Thu Dec 5 22:48:18 2013
New Revision: 21801
URL: http://svn.gna.org/viewcvs/relax?rev=21801view=rev
Log:
Expanded system test and made it pass for user function spectrum.read_spins.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044
Author: tlinnet
Date: Thu Dec 5 22:48:16 2013
New Revision: 21800
URL: http://svn.gna.org/viewcvs/relax?rev=21800view=rev
Log:
Extended reading of sparky files, to include residue names.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from
Author: tlinnet
Date: Thu Dec 5 22:48:13 2013
New Revision: 21798
URL: http://svn.gna.org/viewcvs/relax?rev=21798view=rev
Log:
Created the back end function for the read_spins function.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from
Author: tlinnet
Date: Thu Dec 5 22:48:11 2013
New Revision: 21797
URL: http://svn.gna.org/viewcvs/relax?rev=21797view=rev
Log:
Added interpreter.spectrum.read_spins function.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from SPARKY list
Author: tlinnet
Date: Thu Dec 5 22:48:10 2013
New Revision: 21796
URL: http://svn.gna.org/viewcvs/relax?rev=21796view=rev
Log:
Added systemtest for reading spins from a sparky list.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from SPARKY
Author: tlinnet
Date: Fri Dec 6 09:16:21 2013
New Revision: 21805
URL: http://svn.gna.org/viewcvs/relax?rev=21805view=rev
Log:
Added keyword dim to frontend function for spectrum.read_spins().
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins
Author: tlinnet
Date: Fri Dec 6 09:16:36 2013
New Revision: 21809
URL: http://svn.gna.org/viewcvs/relax?rev=21809view=rev
Log:
Insert check if spin already exist, before creating it.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from SPARKY
Author: tlinnet
Date: Fri Dec 6 09:16:34 2013
New Revision: 21807
URL: http://svn.gna.org/viewcvs/relax?rev=21807view=rev
Log:
Extended reading of spin residue names from NMRPipe SeriesTab formatted file.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044
Author: tlinnet
Date: Fri Dec 6 09:16:35 2013
New Revision: 21808
URL: http://svn.gna.org/viewcvs/relax?rev=21808view=rev
Log:
Modified NMRPipe SeriesTab to read residue numbers and name for two-dimensional
list.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php
Author: tlinnet
Date: Fri Dec 6 09:57:15 2013
New Revision: 21813
URL: http://svn.gna.org/viewcvs/relax?rev=21813view=rev
Log:
Removed name from docstring in GUI test.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from SPARKY list.
Modified
Author: tlinnet
Date: Fri Dec 6 09:57:13 2013
New Revision: 21811
URL: http://svn.gna.org/viewcvs/relax?rev=21811view=rev
Log:
Issuing a warning instead of error when loading spins from sparky list where
residue names are not present.
Work in progress for Support Request #3044,
(https
Author: tlinnet
Date: Fri Dec 6 09:57:17 2013
New Revision: 21814
URL: http://svn.gna.org/viewcvs/relax?rev=21814view=rev
Log:
Added name to Copyrights header of modified files.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from SPARKY list
Author: tlinnet
Date: Fri Dec 6 09:57:18 2013
New Revision: 21815
URL: http://svn.gna.org/viewcvs/relax?rev=21815view=rev
Log:
Changed to use return_spin for testing presence of spin.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from SPARKY
Author: tlinnet
Date: Fri Dec 6 09:57:14 2013
New Revision: 21812
URL: http://svn.gna.org/viewcvs/relax?rev=21812view=rev
Log:
Issued a warning instead of error, when loadning spin residue names from a
NMRPipe SeriesTab formatted file.
Work in progress for Support Request #3044,
(https
Author: tlinnet
Date: Fri Dec 6 09:57:11 2013
New Revision: 21810
URL: http://svn.gna.org/viewcvs/relax?rev=21810view=rev
Log:
Fix for proper spacing and comments in GUI test.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from SPARKY list
Author: tlinnet
Date: Fri Dec 6 11:09:21 2013
New Revision: 21819
URL: http://svn.gna.org/viewcvs/relax?rev=21819view=rev
Log:
Implemented system test for reading spin ID's from NMRView formatted file.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load
Author: tlinnet
Date: Fri Dec 6 11:09:22 2013
New Revision: 21820
URL: http://svn.gna.org/viewcvs/relax?rev=21820view=rev
Log:
Made reading of NMRView formatted file return the residue number as integer
instead of string.
Work in progress for Support Request #3044,
(https://gna.org/support
Author: tlinnet
Date: Fri Dec 6 11:09:19 2013
New Revision: 21818
URL: http://svn.gna.org/viewcvs/relax?rev=21818view=rev
Log:
Fix for issuing a warning when reading spins from a sparky formatted file.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load
Author: tlinnet
Date: Fri Dec 6 11:09:17 2013
New Revision: 21817
URL: http://svn.gna.org/viewcvs/relax?rev=21817view=rev
Log:
Fix for issuing a warning in reading spins from a NMRPipe SeriesTab formatted
file.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php
Author: tlinnet
Date: Fri Dec 6 11:09:16 2013
New Revision: 21816
URL: http://svn.gna.org/viewcvs/relax?rev=21816view=rev
Log:
Implemented another system test for reading NMRPipe SeriesTab files.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins
Author: tlinnet
Date: Fri Dec 6 11:26:35 2013
New Revision: 21821
URL: http://svn.gna.org/viewcvs/relax?rev=21821view=rev
Log:
Fix for calling the warn() function.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from SPARKY list.
Modified
Author: tlinnet
Date: Fri Dec 6 11:31:10 2013
New Revision: 21822
URL: http://svn.gna.org/viewcvs/relax?rev=21822view=rev
Log:
Extended the error description for reading NMRView files.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from SPARKY
Author: tlinnet
Date: Fri Dec 6 11:32:27 2013
New Revision: 21823
URL: http://svn.gna.org/viewcvs/relax?rev=21823view=rev
Log:
Fix for print statement.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from SPARKY list.
Modified:
trunk/lib
Author: tlinnet
Date: Fri Dec 6 12:09:54 2013
New Revision: 21824
URL: http://svn.gna.org/viewcvs/relax?rev=21824view=rev
Log:
Implemented system test for reading spins from a NMRPipe SeriesTab formatted
file, where the assignments for second dimension is missing.
This will be a typically
Author: tlinnet
Date: Fri Dec 6 12:09:56 2013
New Revision: 21825
URL: http://svn.gna.org/viewcvs/relax?rev=21825view=rev
Log:
Fixed for reading spins from a NMRPipe SeriesTab formatted file, where
dimension 2 misses residue number and residue name.
Work in progress for Support Request #3044
Author: tlinnet
Date: Fri Dec 6 12:12:43 2013
New Revision: 21826
URL: http://svn.gna.org/viewcvs/relax?rev=21826view=rev
Log:
Expanded the warning message for a systemtest.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from SPARKY list
Author: tlinnet
Date: Fri Dec 6 13:20:23 2013
New Revision: 21828
URL: http://svn.gna.org/viewcvs/relax?rev=21828view=rev
Log:
If dimension 2 in a SeriesTab formatted file does not contain residue
number+name, it defaults to the dimension 1.
Work in progress for Support Request #3044,
(https
Author: tlinnet
Date: Fri Dec 6 13:20:22 2013
New Revision: 21827
URL: http://svn.gna.org/viewcvs/relax?rev=21827view=rev
Log:
Modified system test for reading an assignment, where the second dimension is
missing.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php
Author: tlinnet
Date: Fri Dec 6 13:23:30 2013
New Revision: 21830
URL: http://svn.gna.org/viewcvs/relax?rev=21830view=rev
Log:
Modified xeasy reading function to pass residue names back.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from
Author: tlinnet
Date: Fri Dec 6 13:23:29 2013
New Revision: 21829
URL: http://svn.gna.org/viewcvs/relax?rev=21829view=rev
Log:
Implemented system test for reading spins from an xeasy file.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from
Author: tlinnet
Date: Fri Dec 6 14:08:34 2013
New Revision: 21831
URL: http://svn.gna.org/viewcvs/relax?rev=21831view=rev
Log:
Copyied SeriesTab file for implementation of double assignment in sparky files.
Added:
trunk/test_suite/shared_data/peak_lists/sparky2dim.list
- copied
Author: tlinnet
Date: Fri Dec 6 15:35:07 2013
New Revision: 21837
URL: http://svn.gna.org/viewcvs/relax?rev=21837view=rev
Log:
Modified sparky peak list for two dimensional assignment example.
This will typically be the export from CcpNmr Analysis.
Work in progress for Support Request #3044
Author: tlinnet
Date: Fri Dec 6 15:35:10 2013
New Revision: 21839
URL: http://svn.gna.org/viewcvs/relax?rev=21839view=rev
Log:
Extended reading of spins from sparky files for up to two dimensional
assignments.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044
Author: tlinnet
Date: Fri Dec 6 15:35:08 2013
New Revision: 21838
URL: http://svn.gna.org/viewcvs/relax?rev=21838view=rev
Log:
Implemented system test for using double assignments in sparky formatted files.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044
Author: tlinnet
Date: Fri Dec 6 15:35:06 2013
New Revision: 21836
URL: http://svn.gna.org/viewcvs/relax?rev=21836view=rev
Log:
Extended system test for reading spins from SPARKY files with empty residue
name+number second dimension assignment.
Work in progress for Support Request #3044
Author: tlinnet
Date: Fri Dec 6 16:46:38 2013
New Revision: 21841
URL: http://svn.gna.org/viewcvs/relax?rev=21841view=rev
Log:
Added system test for reading CcpNmr Analysis exported sparky file
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins
Author: tlinnet
Date: Fri Dec 6 16:46:39 2013
New Revision: 21842
URL: http://svn.gna.org/viewcvs/relax?rev=21842view=rev
Log:
Modified reading of sparky files, when exported from CcpNmr Analysis.
The keyword 'Data' is not present here.
Work in progress for Support Request #3044,
(https
Author: tlinnet
Date: Fri Dec 6 16:46:37 2013
New Revision: 21840
URL: http://svn.gna.org/viewcvs/relax?rev=21840view=rev
Log:
Added example of CcpNmr analysis exported Sparky file.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from SPARKY
Author: tlinnet
Date: Fri Dec 6 18:11:32 2013
New Revision: 21845
URL: http://svn.gna.org/viewcvs/relax?rev=21845view=rev
Log:
Added another systemtest for returning spins from a generic file.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins
Author: tlinnet
Date: Fri Dec 6 18:11:30 2013
New Revision: 21844
URL: http://svn.gna.org/viewcvs/relax?rev=21844view=rev
Log:
Modified the generic list to also return spin information when intensity is not
present.
Work in progress for Support Request #3044,
(https://gna.org/support
Author: tlinnet
Date: Fri Dec 6 18:11:29 2013
New Revision: 21843
URL: http://svn.gna.org/viewcvs/relax?rev=21843view=rev
Log:
Added system for using generic file for reading spins.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from SPARKY
Author: tlinnet
Date: Fri Dec 6 19:24:03 2013
New Revision: 21852
URL: http://svn.gna.org/viewcvs/relax?rev=21852view=rev
Log:
Additional chemical shift reading test for SeriesTab formatted file.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins
Author: tlinnet
Date: Fri Dec 6 19:23:58 2013
New Revision: 21850
URL: http://svn.gna.org/viewcvs/relax?rev=21850view=rev
Log:
Added system test for reading chemical shift from NMRPipe SeriesTab file.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load
Author: tlinnet
Date: Fri Dec 6 19:24:02 2013
New Revision: 21851
URL: http://svn.gna.org/viewcvs/relax?rev=21851view=rev
Log:
Implemented reading of chemical shifts from NMRPipe SeriesTab formatted files.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044
Author: tlinnet
Date: Sun Dec 8 20:16:48 2013
New Revision: 21871
URL: http://svn.gna.org/viewcvs/relax?rev=21871view=rev
Log:
Made systemtest test pass on Mac OS 10.9
Modified:
trunk/test_suite/system_tests/n_state_model.py
Modified: trunk/test_suite/system_tests/n_state_model.py
URL
Author: tlinnet
Date: Mon Dec 9 11:50:20 2013
New Revision: 21892
URL: http://svn.gna.org/viewcvs/relax?rev=21892view=rev
Log:
Added GUI test for reading spins from a spectrum formatted file.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from
Author: tlinnet
Date: Mon Dec 9 11:50:33 2013
New Revision: 21893
URL: http://svn.gna.org/viewcvs/relax?rev=21893view=rev
Log:
Added GUI key 'new spectrum' to point to 'spectrum.read_spins'.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from
Author: tlinnet
Date: Mon Dec 9 11:50:36 2013
New Revision: 21896
URL: http://svn.gna.org/viewcvs/relax?rev=21896view=rev
Log:
Further added to the GUI test for reading spins from spectrum formatted file.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044
Author: tlinnet
Date: Mon Dec 9 11:50:34 2013
New Revision: 21894
URL: http://svn.gna.org/viewcvs/relax?rev=21894view=rev
Log:
Added spectrum.read_spins GUI page for reading spins from a spectrum formatted
file.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php
Author: tlinnet
Date: Mon Dec 9 11:50:35 2013
New Revision: 21895
URL: http://svn.gna.org/viewcvs/relax?rev=21895view=rev
Log:
Added radio button for reading spins from a spectrum formatted file.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins
Author: tlinnet
Date: Mon Dec 9 13:18:03 2013
New Revision: 21900
URL: http://svn.gna.org/viewcvs/relax?rev=21900view=rev
Log:
Fix for GUI text string for the select radio button, reading spins from a
spectrum formatted file.
Work in progress for Support Request #3044,
(https://gna.org
Author: tlinnet
Date: Mon Dec 9 17:49:49 2013
New Revision: 21920
URL: http://svn.gna.org/viewcvs/relax?rev=21920view=rev
Log:
Added system test for the analysis of optimisation of the Kjaergaard et al.,
2013 Off-resonance R1rho relaxation dispersion experiments using the 'DPL'
model.
Work
Author: tlinnet
Date: Mon Dec 9 17:49:35 2013
New Revision: 21919
URL: http://svn.gna.org/viewcvs/relax?rev=21919view=rev
Log:
Added the RMSD determined via showApod for the 69 experiments.
Work in progress for Support Request #3083,
(https://gna.org/support/index.php?3083) - Addition of Data
Author: tlinnet
Date: Mon Dec 9 17:49:50 2013
New Revision: 21921
URL: http://svn.gna.org/viewcvs/relax?rev=21921view=rev
Log:
Modified analysis script for example data of R1rho.
Work in progress for Support Request #3083,
(https://gna.org/support/index.php?3083) - Addition of Data-set
Author: tlinnet
Date: Tue Dec 10 09:51:04 2013
New Revision: 21924
URL: http://svn.gna.org/viewcvs/relax?rev=21924view=rev
Log:
Fix for wrong use of relax_fit.relax_time instead of relax_disp.relax_time.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load
Author: tlinnet
Date: Tue Dec 10 10:36:23 2013
New Revision: 21926
URL: http://svn.gna.org/viewcvs/relax?rev=21926view=rev
Log:
System test turned off until release is over.
Work in progress for Support Request #3044,
(https://gna.org/support/index.php?3044) - Load spins from SPARKY list
Author: tlinnet
Date: Wed Dec 11 11:09:49 2013
New Revision: 21946
URL: http://svn.gna.org/viewcvs/relax?rev=21946view=rev
Log:
Copied sparky list to be modified for sparky file without intensity column.
Added:
trunk/test_suite/shared_data/peak_lists/sparky_wo_int.list
- copied
Author: tlinnet
Date: Wed Dec 11 11:12:07 2013
New Revision: 21947
URL: http://svn.gna.org/viewcvs/relax?rev=21947view=rev
Log:
Modified sparky file to have no columns with intensity.
Modified:
trunk/test_suite/shared_data/peak_lists/sparky_wo_int.list
Modified: trunk/test_suite/shared_data
Author: tlinnet
Date: Thu Dec 12 11:02:00 2013
New Revision: 21949
URL: http://svn.gna.org/viewcvs/relax?rev=21949view=rev
Log:
Implemented to read spins from a SPARKY list, when no intensity column is
present.
Addition to Support Request #3044, (https://gna.org/support/index.php?3044) -
Load
Author: tlinnet
Date: Fri Feb 14 10:32:15 2014
New Revision: 22181
URL: http://svn.gna.org/viewcvs/relax?rev=22181view=rev
Log:
Shifted the pedantic flag to escalate flag. The option -p would insted be used
for the option --prompt.
Fix for sr #3117, (https://gna.org/support/?3117
Author: tlinnet
Date: Fri Feb 14 10:32:17 2014
New Revision: 22182
URL: http://svn.gna.org/viewcvs/relax?rev=22182view=rev
Log:
Added the -p --prompt option for running a relax script and inspect
interactively.
Fix for sr #3117, (https://gna.org/support/?3117) - Functionality to inspect
Author: tlinnet
Date: Fri Feb 14 11:22:56 2014
New Revision: 22183
URL: http://svn.gna.org/viewcvs/relax?rev=22183view=rev
Log:
Second
Modified:
trunk/prompt/interpreter.py
Modified: trunk/prompt/interpreter.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/prompt/interpreter.py?rev=22183r1
Author: tlinnet
Date: Fri Feb 14 11:22:57 2014
New Revision: 22184
URL: http://svn.gna.org/viewcvs/relax?rev=22184view=rev
Log:
Modified the help text to explain that -p will launch relax in prompt mode
after running any optionally supplied scripts.
Fix for sr #3117, (https://gna.org/support
Author: tlinnet
Date: Fri Feb 14 11:47:33 2014
New Revision: 22185
URL: http://svn.gna.org/viewcvs/relax?rev=22185view=rev
Log:
Manually reverted the temporary change of r22184 and 22183.
The command used was:
svn merge -r22184:r22182 .
.
r22184 | tlinnet | 2014-02-14 11:22:57 +0100 (Fri
Author: tlinnet
Date: Fri Feb 14 11:54:44 2014
New Revision: 22186
URL: http://svn.gna.org/viewcvs/relax?rev=22186view=rev
Log:
Modified the help text to explain that -p will launch relax in prompt mode
after running any optionally supplied scripts.
Fix for sr #3117, (https://gna.org/support
Author: tlinnet
Date: Fri Feb 14 12:13:05 2014
New Revision: 22187
URL: http://svn.gna.org/viewcvs/relax?rev=22187view=rev
Log:
Finished implementing the functionality of interacting with variables after
executing a script.
Fix for sr #3117, (https://gna.org/support/?3117) - Functionality
Author: tlinnet
Date: Fri Feb 14 12:28:25 2014
New Revision: 22188
URL: http://svn.gna.org/viewcvs/relax?rev=22188view=rev
Log:
Added Copyright info to modified file.
Fix for sr #3117, (https://gna.org/support/?3117) - Functionality to inspect
interactively after running script
Author: tlinnet
Date: Fri Feb 14 15:19:58 2014
New Revision: 22191
URL: http://svn.gna.org/viewcvs/relax?rev=22191view=rev
Log:
Fix for the user function intro flag.
Fix for sr #3117, (https://gna.org/support/?3117) - Functionality to inspect
interactively after running script - The equivalence
Author: tlinnet
Date: Tue Feb 18 12:05:54 2014
New Revision: 22197
URL: http://svn.gna.org/viewcvs/relax?rev=22197view=rev
Log:
Save state added for bug #21665.
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis
with two fields at two delay times.
Added:
trunk
Author: tlinnet
Date: Tue Feb 18 12:19:41 2014
New Revision: 22198
URL: http://svn.gna.org/viewcvs/relax?rev=22198view=rev
Log:
Added systemtest to catch bug: relax -s
Relax_disp.test_bug_21665_cpmg_two_fields_two_delaytimes_fail
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running
Author: tlinnet
Date: Tue Feb 18 15:26:45 2014
New Revision: 22199
URL: http://svn.gna.org/viewcvs/relax?rev=22199view=rev
Log:
Added a systemtest for using both calc() and a systemtest for relax_disp auto
analysis.
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis
Author: tlinnet
Date: Wed Feb 19 17:23:35 2014
New Revision: 22214
URL: http://svn.gna.org/viewcvs/relax?rev=22214view=rev
Log:
Implemented unit test for catching the correct return of
loop_exp_frq_offset_point_time.
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis
Author: tlinnet
Date: Thu Feb 20 18:15:43 2014
New Revision: 0
URL: http://svn.gna.org/viewcvs/relax?rev=0view=rev
Log:
Added the The relaxation time period to be used when returning cpmg frqs.
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis
with two fields
Author: tlinnet
Date: Thu Feb 20 18:16:39 2014
New Revision: 1
URL: http://svn.gna.org/viewcvs/relax?rev=1view=rev
Log:
Added test for skipping non-matching time points.
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis
with two fields at two delay times
Author: tlinnet
Date: Thu Feb 20 18:17:11 2014
New Revision: 4
URL: http://svn.gna.org/viewcvs/relax?rev=4view=rev
Log:
Improved unit test for cathing both time and dispersion point when looping over
experiment and time points.
Regarding bug #21665, (https://gna.org/bugs/?21665
Author: tlinnet
Date: Thu Feb 20 18:16:51 2014
New Revision: 2
URL: http://svn.gna.org/viewcvs/relax?rev=2view=rev
Log:
Switched the looping over time points and dispersion points.
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis
with two fields at two delay
Author: tlinnet
Date: Mon Feb 24 09:13:39 2014
New Revision: 22256
URL: http://svn.gna.org/viewcvs/relax?rev=22256view=rev
Log:
Reverted the ordering of dispersion point and relaxation time.
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis
with two fields at two
Author: tlinnet
Date: Mon Feb 24 10:59:16 2014
New Revision: 22269
URL: http://svn.gna.org/viewcvs/relax?rev=22269view=rev
Log:
Merge branch 'bug'
Modified:
trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_disp_data.py
Modified:
trunk/test_suite/unit_tests/_specific_analyses
Author: tlinnet
Date: Mon Feb 24 13:59:49 2014
New Revision: 22279
URL: http://svn.gna.org/viewcvs/relax?rev=22279view=rev
Log:
Renamed unit test, to follow previous namings of unit tests.
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis
with two fields at two delay
Author: tlinnet
Date: Mon Feb 24 14:20:41 2014
New Revision: 22283
URL: http://svn.gna.org/viewcvs/relax?rev=22283view=rev
Log:
Added unit test for looping over: exp, frq, offset, point, time.
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis
with two fields at two
Author: tlinnet
Date: Mon Feb 24 14:20:45 2014
New Revision: 22285
URL: http://svn.gna.org/viewcvs/relax?rev=22285view=rev
Log:
Replaced print commands to be compatible with Python 3.x
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis
with two fields at two delay
Author: tlinnet
Date: Mon Feb 24 14:20:43 2014
New Revision: 22284
URL: http://svn.gna.org/viewcvs/relax?rev=22284view=rev
Log:
Expanded the loop_time function to optional take the spectrometer frequency as
input for restricting looping.
Regarding bug #21665, (https://gna.org/bugs/?21665
Author: tlinnet
Date: Mon Feb 24 17:06:36 2014
New Revision: 22293
URL: http://svn.gna.org/viewcvs/relax?rev=22293view=rev
Log:
Added system test for loop_time.
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis
with two fields at two delay times.
This system can
Author: tlinnet
Date: Mon Feb 24 17:06:33 2014
New Revision: 22291
URL: http://svn.gna.org/viewcvs/relax?rev=22291view=rev
Log:
Modified unit test to pass.
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis
with two fields at two delay times.
Implemented as suggested
Author: tlinnet
Date: Mon Feb 24 17:06:35 2014
New Revision: 22292
URL: http://svn.gna.org/viewcvs/relax?rev=22292view=rev
Log:
Expanded the loop_time function to optional take the offset and dispersion
point as input for restricting looping.
Regarding bug #21665, (https://gna.org/bugs/?21665
Author: tlinnet
Date: Mon Feb 24 18:28:11 2014
New Revision: 22294
URL: http://svn.gna.org/viewcvs/relax?rev=22294view=rev
Log:
Replacing looping over time points from cdp.relax_time_list to
loop_time(frq=frq).
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis
Author: tlinnet
Date: Tue Feb 25 15:05:03 2014
New Revision: 22308
URL: http://svn.gna.org/viewcvs/relax?rev=22308view=rev
Log:
Re-ordered unit tests for test of get_curve_type() and
has_exponential_exp_type().
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis
Author: tlinnet
Date: Tue Feb 25 15:04:56 2014
New Revision: 22305
URL: http://svn.gna.org/viewcvs/relax?rev=22305view=rev
Log:
Added test for return of get_curve_type(), to match 'fixed time'.
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis
with two fields at two
Author: tlinnet
Date: Tue Feb 25 15:04:51 2014
New Revision: 22302
URL: http://svn.gna.org/viewcvs/relax?rev=22302view=rev
Log:
Made count_relax_times() take optional arguments as: exp_type, frq, offset,
point.
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis
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