Hello-
I am having unparalleled (no pun intended) problems getting SGE 6.2 to run
under SL 6.1. I have consulted with others who have quite a bit of
experience using SGE on an earlier version of SL, and we cannot determine
why it won't run.
Before I list the nature of the problems, I though I
On Wed, 11 Jan 2012 at 12:43pm, Wil Irwin wrote
I am having unparalleled (no pun intended) problems getting SGE 6.2 to run
under SL 6.1. I have consulted with others who have quite a bit of
experience using SGE on an earlier version of SL, and we cannot determine
why it won't run.
Before I
Are you trying to run either:
1. A 32 bit version of SGE 6.2 on a 64 bit SL 6.1 system?
or
2. A 64 bit version of SGE 6.2 on a 32 bit SL 6.1 system?
In the case #1, you should be able to get SGE to run once you install
the necessary 32 bit compatibility libraries, or
Hi-
It is 64-bit on 64-bit. The exact version is from
'ge-6.2-bin-lx24-amd64.tar.gz' and 'ge-6.2-common.tar.gz'. So I can rule
out that issue.
As for the problems, I can provide more detail, but in brief (sort of):
1. The installation is w/o incident and I have used all the suggested
defaults.
It appears that we can likely eliminate 32/64 bit issues, then.
Some more questions:
Is this 20K command job:
- a sequence of trivially parallel commands,
- an MPI job,
- a job array,
- or is it a complicated DAG?
Can you capture the qsub(s) commands associated with this job?
Are you sure
This smells like there could be problems with glibc version.. the
lx24 is presuming either a kernel version or a glibc version or both.
Do you have the appropriate compatibility glibc libraries installed?
Steve Timm
On Wed, 11 Jan 2012, Wil Irwin wrote:
Hi-
It is 64-bit on 64-bit. The
Hi Keith-
I would characterize the 20K commands as mostly trivial (~5 minutes of CPU
time per command).
Unfortunately, because of the nature of the way the application generates
and submits the commands, it's sort of a close loop. I have not ruled this
out, but, while the suggestion is greatly
