With every release, we hope that the problems we are having are solved,
but they never are. We keep creating our own packages of, amongst
others, openmpi based on Debias Sid. I see now that Gutsy will not see
version 1.2.6. This goes for openmpi in general, not any specific bugs.
--
mpicc
This is mad. It seems that newer versions of ubuntu are based on previous
released versions plenty of bugs. In this way we never will obtain a stable
version that make us proud of Linux.
However, and despite of that, I always prefer Linux! I never loss my hopes.
Gustavo
PS.: the package mpich
I confirm that tis package stills broken in Hardy.
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Hi,
I have updated to the latest version, but I still have problems. After
installing openmpi-bin, there is no executable mpicc, only
mpicc.openmpi. This executable outputs nothing whatsoever.
ilmar
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You received
Sorry for all the posts, but I figured out what the problem was. Or at
least how to solve it. Even though I made sure that no other MPI-
libraries were installed (LAM, MPICH), they earlier presence contributed
to this error. After removing the file /var/lib/dpkg/alternatives/mpicc
the installation
$dpkg -l | grep openmpi
ii openmpi-bin1.1-2.5ubuntu1
high performance message passing library
ii openmpi-common 1.1-2.5ubuntu1
high performance message passing library
ii
Update:
When creating the link
$ cd /usr/bin/
$ sudo ln -s mpicc.openmpi mpicc
it works as it should. So the problem seems to be that mpicc is not linked to
mpicc.openmpi under /usr/bin
ilmar
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Hi,
yes it works fine.
However, I am trying to install a software for modeling that needs both mpi and
hdf5. The last reported lines in the configure file were:
checking for pthread_create in -lpthread... yes
checking for MPI_Init in -lmpich... no
checking for MPI_Init in -lmpi... yes
checking
Copied to gutsy-updates. Thank you!
** Changed in: openmpi (Ubuntu Gutsy)
Status: Fix Committed = Fix Released
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** Tags added: verification-done
** Tags removed: verification-motu-needed verification-needed
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GUTSY VERIFICATION
1.1-2.5:
$ mpicc -showme
$ mpicc -showme:compile
$ mpicc -showme:link
$ ls hello*
hello.c
$ mpicc -Wall -O2 hello.c -o hello
$ ls hello*
hello.c
$
1.1-2.5ubuntu1:
$ mpicc -showme
gcc -I/usr/include/openmpi -pthread -lmpi -lorte -lopal -ldl
-Wl,--export-dynamic -lnsl -lutil
It works.
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Hi,
Seems to work using openmpi 1.1-2.5ubuntu1 packages from gutsy-proposed (I'm
running Gutsy 7.10):
$ mpicc
gcc: no input files
I did this:
System - Administration - Software Sources
Go to Updates tab and check Pre-released updates (gutsy-proposed)
Click on Close and the Reload
System -
Accepted into gutsy-proposed, please test.
** Changed in: openmpi (Ubuntu Gutsy)
Status: Confirmed = Fix Committed
** Tags added: verification-motu-needed verification-needed
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** Changed in: openmpi (Ubuntu Gutsy)
Assignee: (unassigned) = Luca Falavigna (dktrkranz)
Status: Confirmed = In Progress
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Uploaded to gutsy-proposed, now waiting for an archive-admin to accept
it.
** Changed in: openmpi (Ubuntu Gutsy)
Assignee: Luca Falavigna (dktrkranz) = (unassigned)
Status: In Progress = Confirmed
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You
feisty uses version 1.1-2.3 which doesn't have the 99_autoconf patch
that causes problems in gutsy
as far as I know the only ubuntu version that has this problem is gutsy
(it's the only version in ubuntu that has this 99_autoconf patch)
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mpicc (openmpi) broken in Ubuntu 7.10 RC
What about Feisty? Could you please check if it is affected too and
eventually prepare a debdiff for feisty-proposed?
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How do I find a sponsor ?
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Subscribe the ubuntu-universe-sponsors team to this bug report and
leave it unassigned and Confirmed (as it currently is)
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I've pinpointed the problem to one line in the 99_autoconf patch
these are the changes around line 1760 in the current 99_autoconf.patch
file
1759 -datadir='${prefix}/share'
1760 +datarootdir='${prefix}/share'
1761 +datadir='${datarootdir}'
line 1761 should be +datadir='${prefix}/share'
it
result of debdiff openmpi_1.1-2.5.dsc openmpi_1.1-2.5ubuntu1.dsc
openmpi-1.1-2.5--1.1-2.5ubuntu1.debdiff
** Attachment added: openmpi-1.1-2.5--1.1-2.5ubuntu1.debdiff
http://launchpadlibrarian.net/11333534/openmpi-1.1-2.5--1.1-2.5ubuntu1.debdiff
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changes file
** Attachment added: openmpi_1.1-2.5ubuntu1_source.changes
http://launchpadlibrarian.net/11333549/openmpi_1.1-2.5ubuntu1_source.changes
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dsc file
** Attachment added: openmpi_1.1-2.5ubuntu1.dsc
http://launchpadlibrarian.net/11333552/openmpi_1.1-2.5ubuntu1.dsc
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Ok, this debdiff looks a lot better. Please update the original
description to reflect your discovery in comment #22 and then I'd say
it's good enough for upload.
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Also, is this fixed in Hardy? If not, debdiffs against Hardy would be
needed before Gutsy can be SRU'ed.
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Hi John,
Hardy is OK already as hardy has been synced with a newer debian
version that does not have this problem (I believe the 99_autoconf patch
disappeared in subsequent versions)
Koen
** Description changed:
Binary package hint: openmpi-bin
- On Ubuntu 7.04, mpicc from the
Marking Hardy fixed release due to last comment. The description and
debdiff proposed here looks reasonable to me, so please proceed to find
a sponsor to get this into gutsy-proposed.
** Changed in: openmpi (Ubuntu)
Status: Confirmed = Fix Released
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** Changed in: openmpi (Ubuntu Gutsy)
Status: New = Confirmed
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Hi,
Can you please provide a justification for the removal of 99_autoconf
and why its presence breaks the package?
Thanks,
MOTU SRU team
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** Description changed:
Binary package hint: openmpi-bin
On Ubuntu 7.04, mpicc from the openmpi-bin package works and produces
the normal lines to compile a C program that uses MPI:
$ cat /etc/lsb-release
DISTRIB_ID=Ubuntu
DISTRIB_RELEASE=7.04
DISTRIB_CODENAME=feisty
The problem seems to be caused by the autoconf patch that has been added by
debian
changing debian/patches/00list to remove the mention of the 99_autoconf and
removing the 99_autoconf.dpatch file creates a source package that builds
correctly
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mpicc (openmpi) broken in Ubuntu 7.10 RC
the hardy version of openmpi works correctly, so this debdiff is only to
be applied to gutsy
** Changed in: openmpi (Ubuntu)
Assignee: Koen Beek (koen-beek) = (unassigned)
Status: In Progress = Confirmed
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mpicc (openmpi) broken in Ubuntu 7.10 RC
This is a debdiff to remove the 99_autoconf patch
** Attachment added: openmpi_1.1-2.5ubuntu1.debdiff
http://launchpadlibrarian.net/10983347/openmpi_1.1-2.5ubuntu1.debdiff
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You received this bug notification
http://wiki.ubuntu.com/StableReleaseUpdates is the process to get
changes into a stable release.
Unsubscribing ubuntu-universe-sponsors for now.
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Impact of bug : mpicc, mpirun etc are unusable
Already corrected in hardy as hardy uses a different debian version of the
openmpi package (1.2-4.3 and not 1.1-2.5)
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I've changed the debdiff so that the target is gutsy-proposed in stead
of gutsy
** Attachment added: openmpi_1.1-2.5ubuntu1.debdiff.gz
http://launchpadlibrarian.net/10985267/openmpi_1.1-2.5ubuntu1.debdiff.gz
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** Changed in: openmpi (Ubuntu)
Assignee: (unassigned) = Koen Beek (koen-beek)
Status: Confirmed = In Progress
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On 12/12/07, Brian Barnes [EMAIL PROTECTED] wrote:
Apparently, at least two months. And it's still not even triaged. Why
bother? If you needed MPI by now, you've recompiled openmpi yourself,
hex edited it, or switched to a distro that makes sure these things
work, like Fedora. I chose
Apparently, at least two months. And it's still not even triaged. Why
bother? If you needed MPI by now, you've recompiled openmpi yourself,
hex edited it, or switched to a distro that makes sure these things
work, like Fedora. I chose the latter route.
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Guys, what's wrong with you?
Why hexedit the file, if it is possible for the package maintainer just to fix
the damn package.
How many months should it take?
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Sorry, i was wrong in my last post.
The solution mentioned halfflat did not work for me. I have to do the
following.
Replace:
${prefix}/share/openmpi.%s%s%s-wrapper-data.txt
for:
/usr/share/openmpi..%s%s%s-wrapper-data.txt
the dot means a zero byte, so there is two strings in that
The bug is confirmed.
I fixed it with an hex editor (ghex2), but there is no problem with the
${prefix} thing.
The binariy contains:
${prefix}/share/openmpi.%s%s%s-wrapper-data.txt
i just changed that dot after the share/openmpi to a slash, so now it
looks like:
About mpirun. Catch:
$ strace mpirun 21 | grep open
open(/etc/ld.so.cache, O_RDONLY) = 3
open(/usr/lib/liborte.so.0, O_RDONLY) = 3
open(/lib/tls/i686/cmov/libdl.so.2, O_RDONLY) = 3
open(/lib/tls/i686/cmov/libnsl.so.1, O_RDONLY) = 3
open(/lib/tls/i686/cmov/libutil.so.1, O_RDONLY) = 3
You are right, sorry.
I thought your mpirun does not work, so I just tried if does. strace
shows me the same prefix error, but mpirun works fine, though.
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Confirmed for Xubuntu 7.10 amd64.
mpif90, mpicc, mpicxx, all do not work and strace shows the ${prefix}.
I can not confirm russian_knight's bug of mpirun, as it runs all right here
after fixing the compilers.
halfflat's workaround worked fine for me. This way I could fix the 3 mpi* and I
am
I can confirm that this is broken in 7.10
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mpirun has same bug. It is unable to find files from /usr/share/openmpi/
Please fix.
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This is still broken in 7.10 release.
** Changed in: openmpi (Ubuntu)
Status: New = Confirmed
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I can confirm that this problem persists in 7.10. It looks like
something went wrong with the configure process at build time: strace
reveals that mpicc and friends attempt to read ${prefix}/share/openmpi
/mpicc-wrapper-data.txt. The work-around I've used is to open up these
wrapper programs with
I can add that mpif77 does nothing when trying to compile any sort of
fortran file using 7.10 (official release) fresh install, and all the
openmpi* packages installed with gcc/gfortran 4.2 working okay. AMD64.
This is horrible.
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mpicc (openmpi) broken in Ubuntu 7.10 RC
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