Re: [Discuss] graduation

2010-02-16 Thread Adam Lally
On Tue, Feb 16, 2010 at 9:05 AM, Jukka Zitting jukka.zitt...@gmail.com wrote: Hi, Let's push this forward... See below for a proposed board resolution with Marshall as the chairman, with all the current committers (and me as a former mentor) as PMC members, and with the scope I proposed in

[jira] Created: (UIMA-1735) Javadoc Link on Website is Broken

2010-02-04 Thread Adam Lally (JIRA)
Javadoc Link on Website is Broken - Key: UIMA-1735 URL: https://issues.apache.org/jira/browse/UIMA-1735 Project: UIMA Issue Type: Bug Components: Website Reporter: Adam Lally

Re: [Discuss] graduation

2010-02-01 Thread Adam Lally
On Sat, Jan 30, 2010 at 9:59 AM, Eddie Epstein eaepst...@gmail.com wrote: Reading through the main link (use .html not htm) there are a lot of things to do as part of the graduation process, and UIMA looks ready to start. +1 Adam

Re: [VOTE] Release UIMA 2.3.0 RC9 as UIMA 2.3.0 incubating

2010-01-11 Thread Adam Lally
On Mon, Jan 11, 2010 at 11:18 AM, Marshall Schor m...@schor.com wrote: This build keeps the uimacpp and sandbox components from the previous release candidate (the download site on people.apache.org/~schor has hard links to the previous artifacts - so they are guaranteed to be identical).

Re: uima-2.3.0-RC9 available for testing

2010-01-08 Thread Adam Lally
On Thu, Jan 7, 2010 at 6:38 PM, Marshall Schor m...@schor.com wrote: You can find it in the usual place: http://people.apache.org/~schor/uima-release-candidates/2.3.0-RC9/ Let's put it thru some basics to insure the build didn't fail in some unusual way. I installed the Eclipse plugins

[jira] Created: (UIMA-1722) CDE is very slow to open an aggregate containing a remote UIMA-AS component

2010-01-08 Thread Adam Lally (JIRA)
Type: Improvement Components: Async Scaleout, Eclipse plugins Affects Versions: 2.3 Reporter: Adam Lally I have an aggregate containing 3 remote UIMA-AS components. It takes about a minute (maybe more) to open this in the CDE, which makes it very cumbersome to use

Re: Manual calls to components

2009-10-27 Thread Adam Lally
On Tue, Oct 27, 2009 at 10:52 AM, Baptiste Gaillard b_gaill...@hotmail.com wrote: Hi, On our project we are implementing a replacement for the CPE based on OSGI and BPM Workflows. We have successfully created BPM workflows based on UIMA component using a unique data model for each

Re: Manual calls to components

2009-10-27 Thread Adam Lally
On Tue, Oct 27, 2009 at 2:24 PM, Baptiste Gaillard b_gaill...@hotmail.com wrote: Thank you for the link, I do not know why but I missed this part of the documentation, this is exactly what I wanted :-) Are all your JCas classes present in the application's classpath?  If so, there won't be

Re: [jira] Commented: (UIMA-1593) AEs that declare multipleDeploymentAllowed=false can't be deployed as services and called from multiple clients in the same JVM

2009-10-05 Thread Adam Lally
On Mon, Oct 5, 2009 at 10:11 AM, Jaroslaw Cwiklik uim...@gmail.com wrote: it seems to me that this is not just a service wrapper problem. We should try to override this parameter for all remotes, no? It's not specific to UIMA-AS, so it's something that all remote service wrappers should do.

[jira] Created: (UIMA-1593) AEs that declare multipleDeploymentAllowed=false can't be deployed as services and called from multiple clients in the same JVM

2009-09-29 Thread Adam Lally (JIRA)
URL: https://issues.apache.org/jira/browse/UIMA-1593 Project: UIMA Issue Type: Bug Components: Async Scaleout, Core Java Framework Affects Versions: 2.2.2 Reporter: Adam Lally If an AnalysisEngine descriptor declares

Re: Issues around naming of jar files, and maven repositories naming standards renaming our jars

2009-09-16 Thread Adam Lally
Wed, Sep 16, 2009 at 12:28 PM, Marshall Schor m...@schor.com wrote: snip/ If at some point we wanted to conform better to Maven standards, we could rename our artifacts such that the final jar name matched without using the finalName element.  (You might be thinking there's still a problem

[jira] Commented: (UIMA-629) Default file names produced by XmiWriterCasConsumer don't have .xmi extension and can't be read by XmiCollectionReader

2009-09-01 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-629?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=12750168#action_12750168 ] Adam Lally commented on UIMA-629: - +1 Default file names produced by XmiWriterCasConsumer

[jira] Commented: (UIMA-1113) DocumentAnalyzer falls down when running pear specifier and html result view

2009-08-31 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1113?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=12749519#action_12749519 ] Adam Lally commented on UIMA-1113: -- To get the metadata from the PEAR specifier we'd need

[jira] Commented: (UIMA-941) No ProcessTrace events for process calls that take 0ms

2009-08-31 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-941?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=12749523#action_12749523 ] Adam Lally commented on UIMA-941: - In AnalysisEngineImplBase.buildProcessTraceFromMBeanStats

Re: source files packaging

2009-08-31 Thread Adam Lally
On Sat, Aug 29, 2009 at 1:00 PM, Jörn Kottmannkottm...@gmail.com wrote: On Aug 28, 2009, at 3:14 PM, Marshall Schor wrote: We could do this for all of our Jars, and I'm thinking this would be a good idea.  One reason would be it would align us slightly better with the maven way of doing

Re: generics: JFSIndexRepository

2009-08-24 Thread Adam Lally
On Mon, Aug 24, 2009 at 6:55 AM, Jörn Kottmannkottm...@gmail.com wrote: public interface JFSIndexRepository {  FSIndexTOP getIndex(String label);  FSIndexTOP getIndex(String label, int type);  AnnotationIndexAnnotation getAnnotationIndex();  AnnotationIndexAnnotation getAnnotationIndex(int

Re: generics: CasManager.getCasInterface

2009-08-21 Thread Adam Lally
On Fri, Aug 21, 2009 at 7:48 AM, Jörn Kottmannkottm...@gmail.com wrote: Jörn Kottmann wrote: Right now its declared as AbstractCas getCasInterface(CAS cas, Class? extends AbstractCas requiredInterface); but I think it should be T extends AbstractCas T getCasInterface(CAS cas, Class?

Re: generics: ResourceFactory.produceResource

2009-08-20 Thread Adam Lally
On Thu, Aug 20, 2009 at 8:11 AM, Jörn Kottmannkottm...@gmail.com wrote: Adam Lally wrote: On Wed, Aug 19, 2009 at 1:54 PM, Jörn Kottmannkottm...@gmail.com wrote: The current declaration with out generics:  public Resource produceResource(Class aResourceClass, ResourceSpecifier aSpecifier

Re: generics: ResourceFactory.produceResource

2009-08-19 Thread Adam Lally
On Wed, Aug 19, 2009 at 1:54 PM, Jörn Kottmannkottm...@gmail.com wrote: The current declaration with out generics:  public Resource produceResource(Class aResourceClass, ResourceSpecifier aSpecifier,         MapString, Object aAdditionalParams) throws ResourceInitializationException; Can

[jira] Commented: (UIMA-1496) Generics for CasCreationUtils

2009-08-17 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1496?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=12744064#action_12744064 ] Adam Lally commented on UIMA-1496: -- Seems okay. Generics for CasCreationUtils

Re: generics: CasPool

2009-08-17 Thread Adam Lally
On Mon, Aug 17, 2009 at 10:39 AM, Jörn Kottmannkottm...@gmail.com wrote: The CasPool has a constructor CasPool(int aNumInstances, Collection aComponentDescriptionsOrMetaData,         Properties aPerformanceTuningSettings, ResourceManager aResourceManager) where

Re: CasCreationUtils.getMetaDataList returns objects of wrong type ?

2009-08-14 Thread Adam Lally
On Fri, Aug 14, 2009 at 12:10 PM, Jörn Kottmannkottm...@gmail.com wrote: The javadoc says these methods return a List of ProcessingResourceMetaData objects. Inside the private method getMetaDataList, objects which do not have the ProcessingResourceMetaData type are added to the list. That can

Re: CasCreationUtils.getMetaDataList returns objects of wrong type ?

2009-08-14 Thread Adam Lally
On Fri, Aug 14, 2009 at 1:48 PM, Jörn Kottmannkottm...@gmail.com wrote: Yes, I missed something, but getMetaData returns a ResourceMetaData object, is it safe to cast the clone of it to ProcessingResourceMetaData ? I think so, but you could also change it to call

Re: clarifying a generics issue

2009-08-12 Thread Adam Lally
On Wed, Aug 12, 2009 at 5:36 AM, Jörn Kottmannkottm...@gmail.com wrote: Jörn Kottmann wrote: Marshall Schor wrote: I'll probably stop trying to convince others if they continue to feel that the tradeoffs here should be in the direction of returning only specific types (disallowing users

[jira] Commented: (UIMA-1417) ResourceConfigurationException to be thrown from the initialize(context) method

2009-08-12 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1417?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=12742378#action_12742378 ] Adam Lally commented on UIMA-1417: -- I think the documentation is wrong and should

Re: generics: FSIndexRepository

2009-08-12 Thread Adam Lally
On Wed, Aug 12, 2009 at 10:52 AM, Jörn Kottmannkottm...@gmail.com wrote: Hi, after all the discussion we had I think thats the correct way to generify FSIndexRepository: interface FSIndexRepository { FSIndexFeatureStructure getIndex(String label); FSIteratorFeatureStructure

Re: generics: createFilteredIterator

2009-08-12 Thread Adam Lally
On Wed, Aug 12, 2009 at 3:08 PM, Marshall Schorm...@schor.com wrote: Jörn Kottmann wrote: Adam Lally wrote: On Wed, Aug 12, 2009 at 5:54 AM, Jörn Kottmannkottm...@gmail.com wrote: Yes, but if someone writes it intentional he would get the same exception during class casting. That means

Re: clarifying a generics issue

2009-08-11 Thread Adam Lally
On Mon, Aug 10, 2009 at 9:00 PM, Marshall Schorm...@schor.com wrote: Here's a new thread to discuss just one particular issue - a generics tradeoff. In other posts, people have expressed misgivings about letting users downcast ListsomeType to ListsomeSubType, if it cannot be *guaranteed* at

Re: clarifying a generics issue

2009-08-11 Thread Adam Lally
On Tue, Aug 11, 2009 at 7:50 AM, Marshall Schorm...@schor.com wrote: A small correction: allowing downcasting doesn't generate a warning about unchecked casting. Here's a small test case in case you want to play with this: package generics; import java.util.List; public class TestG {  

Re: clarifying a generics issue

2009-08-11 Thread Adam Lally
On Tue, Aug 11, 2009 at 10:44 AM, Jörn Kottmannkottm...@gmail.com wrote: Adam Lally wrote: Lets say we have an interface Box{Number getNumber()} then we could have a class BoxImpl implements Box{Integer getNumber(){...}}. Now I only would have to cast once Box box = ...; BoxImpl boxImpl

Re: [VOTE] generics: have methods returning objects infer the type from the receiving variable type (was: clarifying a generics issue)

2009-08-11 Thread Adam Lally
On Tue, Aug 11, 2009 at 3:16 PM, Marshall Schorm...@schor.com wrote: snip/ So - can we close up this discussion with a vote on the following: On the normal scale of -1, 0, +1, to the proposition - have the generic form of many methods that are in the public API for UIMA that return UIMA

Re: generics: getViewIterator

2009-08-10 Thread Adam Lally
On Mon, Aug 10, 2009 at 10:10 AM, Marshall Schorm...@schor.com wrote: So, we're back to just the issue (unless another use case can be conceived) of how to iterate, where the uses of the iterator want to use methods from CASImpl.  Is the concensus that having to cast here (e.g. IteratorCAS s =

Re: generics: getViewIterator

2009-08-10 Thread Adam Lally
On Mon, Aug 10, 2009 at 9:49 AM, Jörn Kottmannkottm...@gmail.com wrote: Here's another (probably weak) use case for returning T extends AbstractCas kinds of things:  If you have part of the code which collects views and some of these views use one form of the AbstractCas (e.g. CASImpl) and

Re: generics: getViewIterator

2009-08-10 Thread Adam Lally
Same issue with using IteratorAbstractCas Two quick fixes:  casting: IteratorAbstractCas s = (IteratorAbstractCas) aCas.getViewIterator(); and Iterator? super CAS s = aCas.getViewIterator(); Right.. I think it needs to be like this: T extends Iterator? super CAS T getViewIterator() But I

Re: generics: getViewIterator

2009-08-10 Thread Adam Lally
On Mon, Aug 10, 2009 at 12:28 PM, Marshall Schorm...@schor.com wrote: Adam Lally wrote: Same issue with using IteratorAbstractCas Two quick fixes:  casting: IteratorAbstractCas s = (IteratorAbstractCas) aCas.getViewIterator(); and Iterator? super CAS s = aCas.getViewIterator(); Right.. I

Re: Generification of FSIndex

2009-08-10 Thread Adam Lally
On Mon, Aug 10, 2009 at 4:07 PM, Jörn Kottmannkottm...@gmail.com wrote: Marshall Schor wrote: The generification of FSIndex currently specifies one type, T extends FeatureStructure that is the type of item being returned. The contains and find methods have arguments of type

Re: generics: createFilteredIterator

2009-08-10 Thread Adam Lally
On Fri, Aug 7, 2009 at 2:32 PM, Marshall Schorm...@schor.com wrote: The createFilteredIterator method in CASImpl takes an FSIterator and an FSMatchConstraint, and returns another iterator. The generification of this is:  publicT extends FeatureStructure FSIteratorT

Re: Generification of FSIndex

2009-08-10 Thread Adam Lally
On Mon, Aug 10, 2009 at 5:32 PM, Marshall Schorm...@schor.com wrote: Adam Lally wrote: On Mon, Aug 10, 2009 at 4:07 PM, Jörn Kottmannkottm...@gmail.com wrote: Marshall Schor wrote: The generification of FSIndex currently specifies one type, T extends FeatureStructure that is the type

Re: [VOTE] graduate UIMA-AS from sandbox

2009-08-03 Thread Adam Lally
On Fri, Jul 31, 2009 at 11:55 AM, Marshall Schorm...@schor.com wrote: I would like to propose graduating UIMA-AS from the sandbox, making it a separately downloadable add-on to base UIMA. It has been extensively used in several projects and has undergone (as a result) a lot of bug-fixing and

Re: ASB.getAllComponentMetaData

2009-08-03 Thread Adam Lally
On Fri, Jul 31, 2009 at 9:13 AM, Jörn Kottmannkottm...@gmail.com wrote: Hi, what is the correct return type for this method ? Right now its declared to return a MapString, ProcessingResourceMetaData as documented, but is that correct ? Yes, that's right. I took a look at the code and the

Re: right way to fix a bug caused by null being passed as value of additionalParameters in produceResource

2009-07-29 Thread Adam Lally
On Tue, Jul 28, 2009 at 5:20 PM, Marshall Schorm...@schor.com wrote: While fixing up the sandbox build I ran across what looks like a bug - the PearAnalysisEngineWrapper is throwing a NPE because it is being passed in null for the map of additional parameters in its initialize method, and it's

[jira] Closed: (UIMA-1257) Type System Merging Should Produce Consistent Ordering of Types

2009-07-28 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1257?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Adam Lally closed UIMA-1257. Resolution: Fixed Issue declared fixed by popular demand. Type System Merging Should Produce Consistent

[jira] Commented: (UIMA-1257) Type System Merging Should Produce Consistent Ordering of Types

2009-07-27 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1257?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=12735825#action_12735825 ] Adam Lally commented on UIMA-1257: -- I've rethought my last comment. I recently happened

Re: Generics and FSIndex

2009-06-09 Thread Adam Lally
FYI, a while back I posted some code we could consider adding for JCAS that allow you to get iterators parameterized by specific JCAS types: http://www.mail-archive.com/uima-dev@incubator.apache.org/msg04657.html It might be interesting to consider adding something like that directly on the JCAS

[jira] Closed: (UIMA-1344) XCAS Serialization doesn't handle StringArrays with null elements

2009-05-12 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1344?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Adam Lally closed UIMA-1344. Resolution: Fixed Fixed to write empty array element to XCAS instead of throwing NPE. XCAS Serialization

[jira] Created: (UIMA-1344) XCAS Serialization doesn't handle StringArrays with null elements

2009-05-11 Thread Adam Lally (JIRA)
Components: Core Java Framework, Transport Adapters - SOAP, Vinci Affects Versions: 2.2.2 Reporter: Adam Lally Assignee: Adam Lally Fix For: 2.3 This code illustrates the problem: //create string array where some elements are unset (null

Re: small memory footprint tradeoff configuration

2009-03-13 Thread Adam Lally
On Fri, Mar 13, 2009 at 3:07 AM, Thilo Goetz twgo...@gmx.de wrote: Marshall Schor wrote: I agree with both of these concepts:  only GC'ing things which are not in the index and also not reachable from something that is in the index, and making GC'ing (mostly) automatic, based on thresholds,

Re: small memory footprint tradeoff configuration

2009-03-13 Thread Adam Lally
On Thu, Mar 12, 2009 at 3:49 PM, Eddie Epstein eaepst...@gmail.com wrote: On Thu, Mar 12, 2009 at 12:14 PM, Adam Lally ala...@alum.rpi.edu wrote: The next question is under what conditions would a GC execute. Requiring an explicit call seems counter to what other garbage collecting runtime

Re: small memory footprint tradeoff configuration

2009-03-12 Thread Adam Lally
On Wed, Mar 11, 2009 at 8:53 AM, Marshall Schor m...@schor.com wrote: I agree in general about not making things more complicated at least to the user.  I can imagine education working for  1) things like string interning  2) things like deleting features from type systems where they're not

Re: [VOTE] Accept contribution of Lucene CAS Indexer into the sandbox

2009-03-11 Thread Adam Lally
On Wed, Mar 4, 2009 at 6:32 AM, Thilo Goetz twgo...@gmx.de wrote: Please vote to accept the contribution of the Lucene CAS indexer into the sandbox.  See Jira issue UIMA-1299 (https://issues.apache.org/jira/browse/UIMA-1299) for the tar ball.  [ ] +1 Accept Lucene CAS indexer into UIMA

Re: small memory footprint tradeoff configuration

2009-02-25 Thread Adam Lally
On Wed, Feb 25, 2009 at 9:07 AM, Eddie Epstein eaepst...@gmail.com wrote: It seems like Marshall's angle (if I understood it) is not really GC at all, but a model where an annotator decides to explicitly delete FS.  I could be okay with that idea, too.  A GC model by definition should preserve

Re: small memory footprint tradeoff configuration

2009-02-24 Thread Adam Lally
On Tue, Feb 24, 2009 at 2:53 AM, Thilo Goetz twgo...@gmx.de wrote: I have found the discussion again that I was referring to.  It wasn't on this list, it was in the OASIS spec discussions.  Sorry about the confusion.  I don't feel at liberty to publish that conversation here, but maybe Adam

[jira] Commented: (UIMA-857) Change startup of framework to support versioned Jars and simplified classpath

2009-02-18 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-857?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=12674628#action_12674628 ] Adam Lally commented on UIMA-857: - I'm not sure if there's a way to check in the Eclipse

[jira] Commented: (UIMA-857) Change startup of framework to support versioned Jars and simplified classpath

2009-02-17 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-857?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=12674351#action_12674351 ] Adam Lally commented on UIMA-857: - Personally, I still strongly dislike version numbers

Re: Website update work

2009-01-27 Thread Adam Lally
On Tue, Jan 27, 2009 at 3:32 PM, Marshall Schor m...@schor.com wrote: I've updated the re-do of the website, as follows: 1) moved the famous paragraph up to the top on the first page (this is actually several paragraphs...) 2) Made the new picture on the first page float to the right, with

Re: Website update work

2009-01-23 Thread Adam Lally
On Thu, Jan 22, 2009 at 12:47 PM, Marshall Schor m...@schor.com wrote: Some time ago we had some discussion and proposals for a general makeover of the Apache UIMA website. I've taken a crack at incorporating the suggestions from that discussion and some more recent discussions around

Re: Website update work

2009-01-23 Thread Adam Lally
On Fri, Jan 23, 2009 at 1:28 PM, Marshall Schor m...@schor.com wrote: Both Adam and Thilo want a better left-nav bar design - so let's discuss. My thought was to move the most frequently accessed things (a guess, true) toward the top, and to shrink the list by eliminating groupings that

[jira] Reopened: (UIMA-1257) Type System Merging Should Produce Consistent Ordering of Types

2009-01-05 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1257?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Adam Lally reopened UIMA-1257: -- Sorting the type definitions causes a change in the default type priorities. This in turn may break

[jira] Created: (UIMA-1257) Type System Merging Should Produce Consistent Ordering of Types

2008-12-19 Thread Adam Lally (JIRA)
Components: Core Java Framework Affects Versions: 2.2.2 Reporter: Adam Lally Assignee: Adam Lally Priority: Minor Fix For: 2.3 Currently when type systems are merged across annotators, the ordering of the types produced by the merge method

[jira] Work started: (UIMA-1257) Type System Merging Should Produce Consistent Ordering of Types

2008-12-19 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1257?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Work on UIMA-1257 started by Adam Lally. Type System Merging Should Produce Consistent Ordering of Types

[jira] Closed: (UIMA-1257) Type System Merging Should Produce Consistent Ordering of Types

2008-12-19 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1257?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Adam Lally closed UIMA-1257. Resolution: Fixed Fixed by sorting types alphabetically inside CasCreationUtils.mergeTypeSystems Type

[jira] Created: (UIMA-1258) Optimize performance of CasCopier when input and output TypeSystems are the same

2008-12-19 Thread Adam Lally (JIRA)
Issue Type: Improvement Components: Core Java Framework Affects Versions: 2.2.2 Reporter: Adam Lally Assignee: Adam Lally Priority: Minor The CasCopier can spend a lot of time looking up type and feature handles, which is wasted when

[jira] Closed: (UIMA-1258) Optimize performance of CasCopier when input and output TypeSystems are the same

2008-12-19 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1258?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Adam Lally closed UIMA-1258. Resolution: Fixed Fix Version/s: 2.3 Optimize performance of CasCopier when input and output

[jira] Created: (UIMA-1256) UIMA-AS XMI serialization loses items appended to an FSList

2008-12-17 Thread Adam Lally (JIRA)
: Async Scaleout Affects Versions: 2.2.2 Reporter: Adam Lally I have an FSList that contains 2 FeatureStructures. I send it to a remote annotator that creates approximately 40 new FeatureStructures and appends them to the end of the FSList. It also adds these new FSs

[jira] Created: (UIMA-1252) UIMA-Can't run

2008-12-16 Thread Adam Lally (JIRA)
UIMA-Can't run --- Key: UIMA-1252 URL: https://issues.apache.org/jira/browse/UIMA-1252 Project: UIMA Issue Type: Bug Reporter: Adam Lally Priority: Minor -- This message is automatically generated

[jira] Deleted: (UIMA-1252) UIMA-Can't run

2008-12-16 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1252?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Adam Lally deleted UIMA-1252: - UIMA-Can't run --- Key: UIMA-1252 URL: https

[jira] Created: (UIMA-1253) UIMA-AS Can't run Aggregate containing a CAS Consumer delegate

2008-12-16 Thread Adam Lally (JIRA)
Components: Async Scaleout Affects Versions: 2.2.2 Reporter: Adam Lally Priority: Minor I have an aggregate that contains a CAS Consumer as a delegate. When I deploy this as an async aggregate in UIMA-AS, it complains: java.lang.ClassCastException

[jira] Closed: (UIMA-1247) MBean Registration not thread-safe

2008-12-16 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1247?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Adam Lally closed UIMA-1247. This fix works for me. Thanks! MBean Registration not thread-safe

[jira] Created: (UIMA-1248) ResourceManager initialization is not thread-safe

2008-12-10 Thread Adam Lally (JIRA)
Affects Versions: 2.2.2 Reporter: Adam Lally Assignee: Adam Lally Priority: Minor If multiple threads concurrently call UIMAFramework.produceAnalysisEngine and pass the same instance of ResourceManager as an argument, you can get intermittent exceptions

[jira] Commented: (UIMA-1223) Annotators should be initialized in the same thread that their process method will later be called on

2008-12-10 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1223?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=12655240#action_12655240 ] Adam Lally commented on UIMA-1223: -- There is a problem in this patch due to UIMA-1248

[jira] Commented: (UIMA-1247) MBean Registration not thread-safe

2008-12-09 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1247?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=12654892#action_12654892 ] Adam Lally commented on UIMA-1247: -- This is what gets logged: WARNING: JMX failiure: Failed

[jira] Commented: (UIMA-1245) Processing order of parent CAS different on UIMA and UIMA AS

2008-12-08 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1245?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=12654598#action_12654598 ] Adam Lally commented on UIMA-1245: -- Actually I think your proposal to block the parent upon

[jira] Created: (UIMA-1240) Deployment Descriptor Editor resets CAS Pool size for aggregates when you change number of instances of a delegate

2008-11-26 Thread Adam Lally (JIRA)
://issues.apache.org/jira/browse/UIMA-1240 Project: UIMA Issue Type: Bug Components: Async Scaleout Affects Versions: 2.3AS Reporter: Adam Lally Assignee: Tong Fin I have an async aggregate with multiple delegates. When I set the number

Re: [jira] Updated: (UIMA-1232) Fix Synchronization Problem in the UIMA AS code

2008-11-22 Thread Adam Lally
On Fri, Nov 21, 2008 at 5:03 PM, Jerry Cwiklik (JIRA) uima-dev@incubator.apache.org wrote: [ https://issues.apache.org/jira/browse/UIMA-1232?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jerry Cwiklik updated UIMA-1232:

[jira] Commented: (UIMA-1107) Annotator context not set when annotator loaded from PEAR

2008-11-21 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1107?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=12649742#action_12649742 ] Adam Lally commented on UIMA-1107: -- Does your new class need to be a subclass

[jira] Created: (UIMA-1230) When parsing an aggregate descriptor, should parse a shared type system file only once

2008-11-20 Thread Adam Lally (JIRA)
: UIMA Issue Type: Improvement Components: Core Java Framework Affects Versions: 2.2.2 Reporter: Adam Lally Assignee: Adam Lally Priority: Minor Fix For: 2.3 Frequently an aggregate will contain several primitives that all

[jira] Commented: (UIMA-1119) The XmiCasDeserializer throws NoSuchElementException if an XCAS is corrupted, but doesn't report the offending element.

2008-11-11 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1119?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=12646557#action_12646557 ] Adam Lally commented on UIMA-1119: -- I don't see anything wrong with the term XMI CAS

[jira] Created: (UIMA-1223) Annotators should be initialized in the same thread that their process method will later be called on

2008-10-31 Thread Adam Lally (JIRA)
/UIMA-1223 Project: UIMA Issue Type: Bug Components: Async Scaleout Affects Versions: 2.2.2 Reporter: Adam Lally Assignee: Jerry Cwiklik It is more convenient if an annotator is initialized on the same thread that it is later called

[jira] Commented: (UIMA-1199) If a parallel flow involves colocated delegates the application hangs

2008-10-12 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1199?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=12638917#action_12638917 ] Adam Lally commented on UIMA-1199: -- Synchronous UIMA runs them in sequence, and I think

Re: [VOTE] accept the Configurable Feature Extractor (CFE) into the sandbox

2008-10-08 Thread Adam Lally
On Wed, Sep 17, 2008 at 1:48 PM, Marshall Schor [EMAIL PROTECTED] wrote: Please cast your vote to accept the Configurable Feature Extractor into the sandbox. There was a discussion on this on uima-user list (see http://markmail.org/message/ty6eq4ne7r4rvtim ) that ended with a request for a

[jira] Created: (UIMA-1177) Consider making the default setting for Auto Generate JCAS Java source files be off.

2008-09-16 Thread Adam Lally (JIRA)
: UIMA Issue Type: Improvement Components: Eclipse plugins Reporter: Adam Lally Priority: Minor Fix For: 2.3 I think the default should be to not generate the JCAS source files when you save an Analysis Engine Descriptor. (I can see

[jira] Commented: (UIMA-1176) JCasGen shouldn't generate types for imported type systems (or at least it should be an option)

2008-09-16 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1176?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=12631628#action_12631628 ] Adam Lally commented on UIMA-1176: -- Well, how about this: If my main type system

Re: [VOTE] Release uimacpp-2.2.2-03 as uimacpp-2.2.2-incubating

2008-09-05 Thread Adam Lally
On Mon, Aug 25, 2008 at 9:58 AM, Eddie Epstein [EMAIL PROTECTED] wrote: All of the issues raised during discussion of the last release candidate (http://markmail.org/message/z5d4o3hempxeo4sw) have been addressed. The release artifacts and RAT results are available on

[jira] Commented: (UIMA-1163) set svn:eol-style to native for source files in UIMA project

2008-09-03 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1163?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=12628185#action_12628185 ] Adam Lally commented on UIMA-1163: -- As I recall, the maven build scripts explicitly set

Re: Using Delta CAS serialization in UIMA-AS

2008-08-28 Thread Adam Lally
On Thu, Aug 28, 2008 at 10:36 AM, Bhavani Iyer [EMAIL PROTECTED] wrote: On Wed, Aug 27, 2008 at 6:41 PM, Adam Lally [EMAIL PROTECTED] wrote: I agree that if we have the contract and can enforce it, we should. But alternatively, could we relax this parallel step contract when delta CAS

Re: Using Delta CAS serialization in UIMA-AS

2008-08-28 Thread Adam Lally
On Thu, Aug 28, 2008 at 4:25 PM, Bhavani Iyer [EMAIL PROTECTED] wrote: How about this idea instead: If you detect that an Array or List has been modified, then you will need to iterate through everything in the CAS in order to find what FS referred to that array or list. Less efficient than

Re: [VOTE] Accept CAS Viewer source code into the sandbox

2008-08-27 Thread Adam Lally
On Wed, Aug 27, 2008 at 10:08 AM, Eddie Epstein [EMAIL PROTECTED] wrote: With the following understanding: We should decide on one tool as the basis for viewing and editing CASes. As we have already released the CAS Editor, it should be that one tool. We should vote the CasViewer into the

[jira] Commented: (UIMA-1129) XMI serialization support for delta CAS

2008-08-26 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1129?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=12625762#action_12625762 ] Adam Lally commented on UIMA-1129: -- -1. We can't have arbitrary clients turn on Delta CAS

Re: Cad Editor splitting

2008-08-25 Thread Adam Lally
On Mon, Aug 25, 2008 at 2:39 PM, Eddie Epstein [EMAIL PROTECTED] wrote: This does sound like a good direction. In order to use the CAS viewer it should be accepted into the sandbox. Any objection to resubmitting the vote? Eddie Ok with me. -Adam

Re: Cas Viewer discussion

2008-08-22 Thread Adam Lally
On Fri, Aug 22, 2008 at 1:27 PM, Tong Fin [EMAIL PROTECTED] wrote: Hi, It is almost 7 weeks now since I submitted the CAS Viewer. There are some discussions about various issues related to GUI, sharing code, etc. Some are related to CAS Viewer itself and some are general issues related to

Re: [VOTE] Release uimacpp-2.2.2-02 as uimacpp-2.2.2-incubating

2008-08-12 Thread Adam Lally
Pn Mon, Aug 11, 2008 at 8:01 PM, Eddie Epstein [EMAIL PROTECTED] wrote: We have finished testing this release candidate and there are no remaining issues that impact reliability or performance. The release artifacts and RAT results are available on

Re: Cas Viewer discussion

2008-08-07 Thread Adam Lally
On Thu, Aug 7, 2008 at 12:05 PM, Tong Fin [EMAIL PROTECTED] wrote: The approach taken by the CAS Viewer is not new. The GUI design of the CAS Viewer is based on multiple-page form editor like plug-in/manifest editor. In CAS Viewer, each page corresponds to each CAS view (sofa). In each page

Re: Cas Viewer discussion

2008-08-07 Thread Adam Lally
On Thu, Aug 7, 2008 at 5:16 PM, Tong Fin [EMAIL PROTECTED] wrote: For the CAS Editor, editing a CAS is a tedious operation that can take long time, for example, when users try to create gold standard CAS files. It may make sense to have it own perspective for the CAS Editor. Are you

[jira] Commented: (UIMA-1130) Deployment Descriptor should allow setting the number of concurrent listeners for a reply queue

2008-08-06 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1130?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=12620271#action_12620271 ] Adam Lally commented on UIMA-1130: -- I think Eddie is probably right that increasing

Re: Cas Viewer discussion

2008-08-01 Thread Adam Lally
On Fri, Aug 1, 2008 at 2:33 PM, Jörn Kottmann [EMAIL PROTECTED] wrote: I still think that the huge benefit of doing it the Cas Editor way with multiple views: + Its easier to explore a CAS file because there is more screen space to see things. I agree with that. I've used the CAS Editor a

[jira] Commented: (UIMA-1130) Deployment Descriptor should allow setting the number of concurrent listeners for a reply queue

2008-07-31 Thread Adam Lally (JIRA)
[ https://issues.apache.org/jira/browse/UIMA-1130?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=12618867#action_12618867 ] Adam Lally commented on UIMA-1130: -- If you require the reply queues to be remote, please

[jira] Created: (UIMA-1130) Deployment Descriptor should allow setting the number of concurrent listeners for a reply queue

2008-07-30 Thread Adam Lally (JIRA)
Project: UIMA Issue Type: Improvement Components: Async Scaleout Affects Versions: 2.2.2 Reporter: Adam Lally The Spring XML allows setting a concurrentConsumers property for a reply queue (either an aggregate's collocated reply queue or a remote

Re: storing particular release documentation in SVN in our project web-site pages

2008-07-25 Thread Adam Lally
On Fri, Jul 25, 2008 at 3:09 AM, Thilo Goetz [EMAIL PROTECTED] wrote: Let's look at this from the user's perspective. Who of our users needs access to all the old documentation? If there is a significant number of people who would benefit from this, then I'm for it. Else, let's not put up

Re: storing particular release documentation in SVN in our project web-site pages

2008-07-25 Thread Adam Lally
On Fri, Jul 25, 2008 at 10:07 AM, Thilo Goetz [EMAIL PROTECTED] wrote: So you're saying having the old documentation is marginally useful. Then I suggest we create an archive section where we put all the old stuff, distributions and documentation. Less clutter, but it's still around.

Re: storing particular release documentation in SVN in our project web-site pages

2008-07-24 Thread Adam Lally
On Thu, Jul 24, 2008 at 4:40 PM, Marshall Schor [EMAIL PROTECTED] wrote: The current situation is that we have in SVN copies of the docs (Javadocs, plus docbook docs in html and pdf format) for all releases (of UIMA). Well, that's not quite accurate - some of the previous releases didn't have

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