Hi all,
I'm very sorry to bother the list with this problem but I've been
searching in the web the couples hours to find an answer and still
haven't find any.
The problem is that I have a txt file of 3.5GB containing all the info
of Human chromosome 6. I want to save into one another file
A.J.Mechelynck wrote:
Nikolaos A. Patsopoulos wrote:
Hi all,
I'm very sorry to bother the list with this problem but I've been
searching in the web the couples hours to find an answer and still
haven't find any.
The problem is that I have a txt file of 3.5GB containing all the
info
Tim Chase wrote:
grep 'rs10946498' chr6.txt | grep -v 'rs10946498.*rs10946498'
out.txt
Sed might allow it in one pass with something like
sed -e '/rs10946398/!d' -e '/rs10946398.*rs10946398/d'
chr6.txt out.txt
Still try to migrate from Windows to linux, but hopefully will done it
A.J.Mechelynck wrote:
Nikolaos A. Patsopoulos wrote:
Tim Chase wrote:
I have a text that has many occurrences of a pattern . I want to
delete every consecutive occurrence, e.g.
Pattern Pattern other text Pattern Pattern Pattern Pattern other
text Pattern Pattern Pattern
should look like
Jόrgen Krδmer wrote:
Hi,
Nikolaos A. Patsopoulos wrote:
Tim Chase wrote:
I have a text that has many occurrences of a pattern . I want to delete
every consecutive occurrence, e.g.
Pattern Pattern other text Pattern Pattern Pattern Pattern other text
Pattern Pattern Pattern
should
Hi,
I want to join all lines that are inside a given pattern and occurs more
than once in the text, ie:
PatternStart
text1
text2
...text3
..text4
PatternEnd
...
...
PatternStart
text1
text2
...text3
..text4
...
...textn
PatternEnd
...
PatternStart
Tobia wrote:
I don't think Vim's regular expressions are the best tool for this job.
I mean, XML manipulation is much easier done in XSLT:
?xml version=1.0?
xsl:stylesheet version=1.0 xmlns:xsl=http://www.w3.org/1999/XSL/Transform;
xsl:template match=article
xsl:copy
Hi all,
I've got xml files that each have 500 entries marked as article
/article .in each entry there are fields author/author. Some articles
have non author fields and some have more than one. What I want to do is every
article to have only one such field, e.g. if an article has 3
Ηι,
I'm want to group a text that has the following text pattern (values and
number of lines vary across instances):
PMID16893921/PMID
Volume164/Volume
Issue7/Issue
Year2006/Year
ISOAbbreviationAm. J. Epidemiol./ISOAbbreviation
ArticleTitleImplications of small effect sizes of individual
Hi,
I would like to delete all end of lines (\n) inside a given pattern that
runs through a text. The pattern is like this:
PubmedArticle
text1 \n
text2 \n
text3 \n
text4 \n
text5 \n
text6 \n
... \n
PubmedArticle
Any help?
Thanks
Hi all,
is there a way to edit pdf files with vim? If not pdf as is, then eps or
postscript? I tried with either format but the text kept been converted
to sthl ike ASCII code.
Thanks,
Nikos
Mike Williams wrote:
Nikolaos A. Patsopoulos did utter on 10/10/2006 14:58:
Hi all,
is there a way to edit pdf files with vim? If not pdf as is, then eps
or postscript? I tried with either format but the text kept been
converted to sthl ike ASCII code.
In general trying to edit PDF
Hi all!
Another replacement question:
how can I replace all occurrence of a pattern except a given one, e.g.
the first or third?
the code for all occurrences I use is:
:%s/a.\{-}//g
Thanks in advance,
Nikos
Yakov Lerner wrote:
On 9/20/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
Hi all!
Another replacement question:
how can I replace all occurrence of a pattern except a given one, e.g.
the first or third?
the code for all occurrences I use is:
:%s/a.\{-}//g
/pattern/+1,$s///g
Yakov
A.J.Mechelynck wrote:
Nikolaos A. Patsopoulos wrote:
A.J.Mechelynck wrote:
Nikolaos A. Patsopoulos wrote:
Hi,
another two questions:
1. I want to delete all text that has a specific pattern. I use the
following code with s command but I want to keep the \a character
in the beginning:
:%s
Hi,
I have a series of questions:
1. I want to edit multiple files from command line so I created a vim
script with all the commands (20). I use a batch file in WinXP:
|@echo off
vim -s script file.txt
exit
however I need to run this script on multiple files. In vim's help there is
this
Yakov Lerner wrote:
On 9/14/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
2.Can I delete after a pattern search? Sth like this:
:/^html\_.{-}body: /-3d
and how can I repeat this globally?
:g/^html\_.{-}body: /.-3d
Yakov
I get an E16: invalid range error
--
Nikolaos
Yakov Lerner wrote:
On 9/14/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
Yakov Lerner wrote:
On 9/14/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
Yakov Lerner wrote:
On 9/14/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
2.Can I delete after a pattern search? Sth
Yakov Lerner wrote:
On 9/14/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
Yakov Lerner wrote:
On 9/14/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
3. This is not Vim related but I wonder if anyone knows sth. I have
the following structure of folders and files:
..
folder1
Steve Hall wrote:
On Thu, 2006-09-14 at 13:01 +0300, Nikolaos A. Patsopoulos wrote:
1. I want to edit multiple files from command line so I created a
vim script with all the commands (20). I use a batch file in WinXP:
|@echo off
vim -s script file.txt
exit
however I need to run
(actually it's just one instruction, so u
don't even need to have a batch file for it)
Regards,
Sibin
-Original Message-
From: Nikolaos A. Patsopoulos [mailto:[EMAIL PROTECTED]
Sent: Thursday, September 14, 2006 3:31 PM
To: vim@vim.org
Subject: vim | multiple files editing and delete question
Hi,
another two questions:
1. I want to delete all text that has a specific pattern. I use the
following code with s command but I want to keep the \a character in the
beginning:
:%s/\a,\_.\{-}\/td\/tr/
2.
how can I join lines that have non-numerical characters?
e.g.
153
Purdue
Canc Ct
1256
A.J.Mechelynck wrote:
Nikolaos A. Patsopoulos wrote:
Hi,
another two questions:
1. I want to delete all text that has a specific pattern. I use the
following code with s command but I want to keep the \a character in
the beginning:
:%s/\a,\_.\{-}\/td\/tr/
To delete everything that matches
Hi,
how can anyone add the filename in the file in ex-mode?
C-R% and %p works only in normal mode
Thanks,
Nikos
Jürgen Krämer wrote:
Hi,
Nikolaos A. Patsopoulos wrote:
how can anyone add the filename in the file in ex-mode?
C-R% and %p works only in normal mode
:put %
Regards,
Jürgen
That seems to insert the filename in random place. What if I want to
place it e.g. in the beginning
Tim Chase wrote:
:put %
That seems to insert the filename in random place. What if I
want to place it e.g. in the beginning of each line?
It inserts it on the line below where the cursor currently is. You can
specify a target (as in
:30put %
which will put it below line #30)
If you
Hi,
I'm trying to delete several lines from the beginning of file till the
appearance of a specific pattern, without deleting the pattern. I have
used the following command:
:1,/Citations: /d/e-10
but the offset doesn't work.
Thanks in advance,
Nikos
Yakov Lerner wrote:
On 9/13/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
Hi,
I'm trying to delete several lines from the beginning of file till the
appearance of a specific pattern, without deleting the pattern. I have
used the following command:
:1,/Citations: /d/e-10
but the offset
Yakov Lerner wrote:
On 9/13/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
Yakov Lerner wrote:
On 9/13/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
Hi,
I'm trying to delete several lines from the beginning of file till
the
appearance of a specific pattern, without deleting
Yakov Lerner wrote:
On 9/13/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
Yakov Lerner wrote:
On 9/13/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
Hi,
I'm trying to delete several lines from the beginning of file till
the
appearance of a specific pattern, without deleting
A.J.Mechelynck wrote:
Nikolaos A. Patsopoulos wrote:
Hi,
I'm trying to delete several lines from the beginning of file till
the appearance of a specific pattern, without deleting the pattern. I
have used the following command:
:1,/Citations: /d/e-10
but the offset doesn't work.
Thanks
Yakov Lerner wrote:
On 9/13/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
Yakov Lerner wrote:
On 9/13/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
Yakov Lerner wrote:
On 9/13/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
Hi,
I'm trying to delete several lines
Yakov Lerner wrote:
On 9/13/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
Yakov Lerner wrote:
On 9/13/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
Yakov Lerner wrote:
On 9/13/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
Hi,
I'm trying to delete several lines
A.J.Mechelynck wrote:
Nikolaos A. Patsopoulos wrote:
Yakov Lerner wrote:
On 9/13/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
Yakov Lerner wrote:
On 9/13/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED] wrote:
Yakov Lerner wrote:
On 9/13/06, Nikolaos A. Patsopoulos [EMAIL PROTECTED
Hi,
is there a way to yank in ex-mode? I want to find all \d\d\d\dnbsp; in
my file and put them in the end of their containing line.
Thanks in advance,
Nikos
Tim Chase wrote:
is there a way to yank in ex-mode? I want to find all
\d\d\d\dnbsp; in my file and put them in the end of their
containing line.
1) yes, you can yank in ex-mode, though it usually happens in
line-wise fashion, unless you pull some stunts to prevent that:
:10y
will yank
Hi,
I'm trying to fix a file in the following format :
5,329;
1999;
a Univ Washington/a;
695;
2001;
NHLBI;
684;
1998;
a Stanford Univ/a;
3,537;
1998;
La Jolla Inst Allergy Immunol;
3,333;
1996;
a BRIGHAM WOMENS HOSP/a;
2,967;
1998;
a Northwestern Univ/a;
2,936;
2002;
a NHLBI/a;
2,695;
1996;
a
Max Dyckhoff wrote:
It seems like you are just trying to join groups of three lines, which you can
do very easily using this following command:
:g/./j!3
Hope that helps!
Max
-Original Message-
From: Nikolaos A. Patsopoulos [mailto:[EMAIL PROTECTED]
Sent: Wednesday, September 13
file (since it is impossible to cut paste
the whole code here) but I've got a failure notice.
I have published a html file in the following address: http://users.uoi.gr/npatsop/portal_002.htm
Thanks in advance,
Nikos
--
Nikolaos A. Patsopoulos, MD
Department of Hygiene and Epidemiology
not an editor.
Hope this gives some inspiration.
On Sep 6, 2006, at 06:14, Nikolaos A. Patsopoulos wrote:
I have a huge pack of html files (1000) and I want to extract some
info on cvs files.
#!/usr/bin/perl
# Very
Alan G Isaac wrote:
On Thu, 25 May 2006, Nikolaos A. Patsopoulos apparently
wrote:
In detail: 1.I want in front of the number in the first
column to add # , then change line after the value 2.
change line after 3rd column 3. change line after 5th
column 4. repeat all three steps
Alan G Isaac wrote:
On Thu, 25 May 2006, Nikolaos A. Patsopoulos apparently
wrote:
The replacement didn't occur to the whole file.
You must have forgotten the '%'.
hth,
Alan Isaac
No, I used %.
Got them same problem with Tim's code
:(
Alan G Isaac wrote:
On Thu, 25 May 2006, Nikolaos A. Patsopoulos apparently wrote:
No, I used %.
Got them same problem with Tim's code
Something is not right ...
Try using
:g/./s/
instead of
:%s/
and see what happens.
hth,
Alan Isaac
Works great!
Million thanks!
Nikos
Alan G Isaac wrote:
On Thu, 25 May 2006, Nikolaos A. Patsopoulos apparently wrote:
No, I used %.
Got them same problem with Tim's code
Something is not right ...
Try using
:g/./s/
instead of
:%s/
and see what happens.
hth,
Alan Isaac
One last question:
I get this:
#3
00
Alan G Isaac wrote:
On Thu, 25 May 2006, Nikolaos A. Patsopoulos apparently wrote:
00 must become 0 0
The original replacement I sent had these spaces in it:
:g/./s/^\(\d\+\)\s\+\([01]\)\s\+\([01]\)\s\+\([01]\)\s\+\([01]\)\s*/#\1\r\2
\3\r\4 \5
Look after \2 and after \4
hth,
Alan
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