>> TPP v4.0 JETSTREAM rev 2 There's a newer release, perhaps the problem has already been resolved.
-----Original Message----- From: spctools-discuss@googlegroups.com [mailto:[EMAIL PROTECTED] On Behalf Of marpello Sent: Tuesday, November 18, 2008 3:33 AM To: spctools-discuss Subject: [spctools-discuss] Problem with ProdID and TPP Hi all, I installed ProdID and TPP on two different computers. I have download my database and I have run ProbID. Then I converted the file.out to file.xml. In this file I changed the database path and I pointed it on the same database installed on TPP computer. I run xinteract without PeptideProphet and the commad successful, but the file generated is empty. Moreover if I run PeptideProphet the command failed with the follow messagge: ---------------------------------- xinteract (TPP v4.0 JETSTREAM rev 2, Build 200807011544 (MinGW)) running: "C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml" "c:/ Inetpub/wwwroot/ISB/data/example.xml"" file 1: c:/Inetpub/wwwroot/ISB/data/example.xml processed altogether 0 results results written to file c:/Inetpub/wwwroot/ISB/data/interact.pep.xml direct your browser to http://localhost/ISB/data/interact.pep.shtml command completed in 1 sec running: "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" MINPROB=0.05 EXTRAITRS=20" (PROBID) MS Instrument info: Manufacturer: UNKNOWN, Model: UNKNOWN, Ionization: UNKNOWN, Analyzer: UNKNOWN, Detector: UNKNOWN command "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" MINPROB=0.05 EXTRAITRS=20" failed: Unknown error command "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" MINPROB=0.05 EXTRAITRS=20" exited with non-zero exit code: -1073741819 QUIT - the job is incomplete Command FAILED -------------------------------------------------- So, I'd like to know where is the error?! What kind of file I must submit to xinteract?! I paste my file.xml ------------------------------------------------------- <?xml version="1.0" encoding="UTF-8"?> <?xml-stylesheet type="text/xsl" href="/data3/search/akeller/ pepXML_protXML/trans_proteomic_pipeline/pepXML_std.xsl"?> <msms_pipeline_analysis date="2008-11-18T12:51:27" xmlns="http://regis- web.systemsbiology.net/pepXML" xmlns:xsi="http://www.w3.org/2001/ XMLSchema-instance" xsi:schemaLocation="http://regis- web.systemsbiology.net/pepXML /data3/search/akeller/pepXML_protXML/ trans_proteomic_pipeline/pepXML_v18.xsd" summary_xml="example.xml"> <msms_run_summary base_name="/home/marco/Desktop/probIDexample" raw_data_type="raw" raw_data=".mzXML"> <sample_enzyme name="Trypsin"> <specificity sense="C" cut="KR" no_cut="P"/> </sample_enzyme> <search_summary base_name="/home/marco/Desktop/probIDexample" search_engine="PROBID" precursor_mass_type="average" fragment_mass_type="average" out_data_type=".out" out_data=".tgz" search_id="1"> <search_database local_path="C:\Inetpub\wwwroot\ISB\data\dbase \fusarium_oxysporum_f._sp._lycopersici_2_proteins.fasta" type="AA"/> <enzymatic_search_constraint enzyme="Trypsin" max_num_internal_cleavages="0" min_number_termini="2"/> <parameter name="precursor_mass_tolerance" value="3.0"/> <parameter name="fragment_mass_tolerance" value="1.0"/> <parameter name="ion_series" value="0 1 0 0 0 0 0 1 0"/> <parameter name="num_output_lines" value="10"/> </search_summary> </msms_run_summary> </msms_pipeline_analysis> ------------------------------------------ thanks, marco --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
