Thanks. That's exactly it.  It makes perfect sense why it just happens to 
work when I join one bar onto this, but not two.

FYI, I'm not seeing a comma on the simple join - but it's still a bad query 
that illustrates the problem as Bar doesn't get joined in:

   SELECT foo.id AS foo_id  FROM foo JOIN foo2bar ON foo.id = 
foo2bar.foo_id AND foo2bar.bar_id = bar.id AND bar.is_special = true LIMIT 
%(param_1)s

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